Variant report

Variant	rs7939531
Chromosome Location	chr11:10196316-10196317
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs1372810	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1450265	1.00[ASN][1000 genomes]
rs1450266	1.00[ASN][1000 genomes]
rs1450268	1.00[ASN][1000 genomes]
rs1450275	1.00[ASN][1000 genomes]
rs1450276	1.00[ASN][1000 genomes]
rs16907654	1.00[ASN][1000 genomes]
rs17272133	1.00[ASN][1000 genomes]
rs17292774	1.00[ASN][1000 genomes]
rs17294609	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17294693	1.00[ASN][1000 genomes]
rs17296211	1.00[ASN][1000 genomes]
rs17296765	1.00[ASN][1000 genomes]
rs17358721	1.00[ASN][1000 genomes]
rs17358882	1.00[ASN][1000 genomes]
rs17359382	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17360118	1.00[ASN][1000 genomes]
rs28733206	1.00[ASN][1000 genomes]
rs4077089	1.00[ASN][1000 genomes]
rs61877039	1.00[ASN][1000 genomes]
rs61877042	1.00[ASN][1000 genomes]
rs61877044	1.00[ASN][1000 genomes]
rs61877046	1.00[ASN][1000 genomes]
rs61877050	1.00[ASN][1000 genomes]
rs61877054	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61877264	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61878586	1.00[ASN][1000 genomes]
rs61878654	1.00[ASN][1000 genomes]
rs61878655	1.00[ASN][1000 genomes]
rs61878657	1.00[ASN][1000 genomes]
rs61878658	1.00[ASN][1000 genomes]
rs61878659	1.00[ASN][1000 genomes]
rs61880160	1.00[ASN][1000 genomes]
rs61889783	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61889785	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61889795	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61889796	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61889802	1.00[ASN][1000 genomes]
rs61889815	1.00[ASN][1000 genomes]
rs61889816	1.00[ASN][1000 genomes]
rs61889817	1.00[ASN][1000 genomes]
rs61889836	1.00[ASN][1000 genomes]
rs61889840	1.00[ASN][1000 genomes]
rs61889842	1.00[ASN][1000 genomes]
rs61889843	1.00[ASN][1000 genomes]
rs61889845	1.00[ASN][1000 genomes]
rs61889846	1.00[ASN][1000 genomes]
rs61889847	1.00[ASN][1000 genomes]
rs61889956	0.80[AFR][1000 genomes]
rs61889957	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61891762	1.00[ASN][1000 genomes]
rs61891764	1.00[ASN][1000 genomes]
rs61891767	1.00[ASN][1000 genomes]
rs61891768	1.00[ASN][1000 genomes]
rs61891770	1.00[ASN][1000 genomes]
rs61891773	1.00[ASN][1000 genomes]
rs61891776	1.00[ASN][1000 genomes]
rs61891793	1.00[ASN][1000 genomes]
rs61892569	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61892570	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61892572	1.00[ASN][1000 genomes]
rs61892573	1.00[ASN][1000 genomes]
rs61892575	1.00[ASN][1000 genomes]
rs61892593	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61892594	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61892595	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61892596	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61892597	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs66536570	1.00[ASN][1000 genomes]
rs66553354	1.00[ASN][1000 genomes]
rs7103637	1.00[ASN][1000 genomes]
rs7104591	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7105355	1.00[ASN][1000 genomes]
rs7107373	1.00[ASN][1000 genomes]
rs7108187	1.00[ASN][1000 genomes]
rs7108385	1.00[ASN][1000 genomes]
rs7109096	1.00[ASN][1000 genomes]
rs7111544	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7111647	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7118211	1.00[ASN][1000 genomes]
rs7120043	1.00[ASN][1000 genomes]
rs7120403	1.00[ASN][1000 genomes]
rs7122370	1.00[ASN][1000 genomes]
rs7123541	1.00[ASN][1000 genomes]
rs7123546	1.00[ASN][1000 genomes]
rs7125823	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7129220	1.00[ASN][1000 genomes]
rs7131546	1.00[ASN][1000 genomes]
rs72850458	1.00[ASN][1000 genomes]
rs72851648	1.00[ASN][1000 genomes]
rs72851670	1.00[ASN][1000 genomes]
rs72851674	1.00[ASN][1000 genomes]
rs72857108	1.00[ASN][1000 genomes]
rs72858820	1.00[ASN][1000 genomes]
rs72858863	1.00[ASN][1000 genomes]
rs72858902	1.00[ASN][1000 genomes]
rs72861738	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72861762	1.00[ASN][1000 genomes]
rs72861767	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72861799	1.00[ASN][1000 genomes]
rs7929332	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7930218	1.00[ASN][1000 genomes]
rs7933724	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7935257	1.00[ASN][1000 genomes]
rs7939096	1.00[ASN][1000 genomes]
rs7945990	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7947210	1.00[ASN][1000 genomes]
rs7949974	1.00[ASN][1000 genomes]
rs896043	1.00[ASN][1000 genomes]
rs9705133	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3377221	chr11:10195476-10199774	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10178200-10213400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:10184600-10211400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:10186200-10209200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:10188000-10222800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:10194800-10206800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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