Variant report

Variant	rs61891793
Chromosome Location	chr11:10367069-10367070
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs1372810	1.00[ASN][1000 genomes]
rs1450265	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450266	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450268	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450275	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450276	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1470686	0.90[EUR][1000 genomes]
rs1597450	0.92[EUR][1000 genomes]
rs16907654	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17292774	1.00[ASN][1000 genomes]
rs17294609	1.00[ASN][1000 genomes]
rs17294693	1.00[ASN][1000 genomes]
rs17296211	1.00[ASN][1000 genomes]
rs17296765	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17358721	1.00[ASN][1000 genomes]
rs17358882	1.00[ASN][1000 genomes]
rs17359382	1.00[ASN][1000 genomes]
rs17360118	1.00[ASN][1000 genomes]
rs2044781	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28733206	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2957686	0.89[EUR][1000 genomes]
rs4077089	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4403799	0.82[EUR][1000 genomes]
rs61877264	1.00[ASN][1000 genomes]
rs61878655	1.00[ASN][1000 genomes]
rs61878657	1.00[ASN][1000 genomes]
rs61878658	1.00[ASN][1000 genomes]
rs61878659	1.00[ASN][1000 genomes]
rs61880160	1.00[ASN][1000 genomes]
rs61889783	1.00[ASN][1000 genomes]
rs61889785	1.00[ASN][1000 genomes]
rs61889795	1.00[ASN][1000 genomes]
rs61889796	1.00[ASN][1000 genomes]
rs61889802	1.00[ASN][1000 genomes]
rs61889815	1.00[ASN][1000 genomes]
rs61889816	1.00[ASN][1000 genomes]
rs61889817	1.00[ASN][1000 genomes]
rs61889836	1.00[ASN][1000 genomes]
rs61889840	1.00[ASN][1000 genomes]
rs61889842	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889843	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889845	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889846	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889847	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889957	1.00[ASN][1000 genomes]
rs61891762	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891764	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891767	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891768	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891770	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891771	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs61891773	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891775	0.92[EUR][1000 genomes]
rs61891776	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892569	1.00[ASN][1000 genomes]
rs61892570	1.00[ASN][1000 genomes]
rs61892572	1.00[ASN][1000 genomes]
rs61892573	1.00[ASN][1000 genomes]
rs61892575	1.00[ASN][1000 genomes]
rs61892593	1.00[ASN][1000 genomes]
rs61892594	1.00[ASN][1000 genomes]
rs61892595	1.00[ASN][1000 genomes]
rs61892596	1.00[ASN][1000 genomes]
rs61892597	1.00[ASN][1000 genomes]
rs7103637	1.00[ASN][1000 genomes]
rs7104591	1.00[ASN][1000 genomes]
rs7105355	1.00[ASN][1000 genomes]
rs7107373	1.00[ASN][1000 genomes]
rs7108385	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109096	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111544	1.00[ASN][1000 genomes]
rs7111647	1.00[ASN][1000 genomes]
rs7123541	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7125823	1.00[ASN][1000 genomes]
rs7129220	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850458	1.00[ASN][1000 genomes]
rs72851648	1.00[ASN][1000 genomes]
rs72851670	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851674	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861738	1.00[ASN][1000 genomes]
rs72861762	1.00[ASN][1000 genomes]
rs72861767	1.00[ASN][1000 genomes]
rs72861799	1.00[ASN][1000 genomes]
rs7929332	1.00[ASN][1000 genomes]
rs7930218	1.00[ASN][1000 genomes]
rs7933724	1.00[ASN][1000 genomes]
rs7935257	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939531	1.00[ASN][1000 genomes]
rs7941320	0.95[EUR][1000 genomes]
rs7941557	0.91[EUR][1000 genomes]
rs7945990	1.00[ASN][1000 genomes]
rs7947210	1.00[ASN][1000 genomes]
rs7949974	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs896043	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9705133	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10348200-10370200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links