Variant report

Variant	rs4403799
Chromosome Location	chr11:10330455-10330456
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10314422..10317147-chr11:10327890..10331590,5	MCF-7	breast:
2	chr11:9596850..9599628-chr11:10329310..10331865,2	MCF-7	breast:
3	chr11:9777333..9782154-chr11:10324598..10331360,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133812	Chromatin interaction
ENSG00000238387	Chromatin interaction
ENSG00000246273	Chromatin interaction
ENSG00000166483	Chromatin interaction
ENSG00000245522	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs13306112	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs13306113	0.92[ASN][1000 genomes]
rs1372810	0.82[EUR][1000 genomes]
rs1450265	0.93[EUR][1000 genomes]
rs1450266	0.90[EUR][1000 genomes]
rs1450268	0.90[EUR][1000 genomes]
rs1450275	0.87[EUR][1000 genomes]
rs1450276	0.81[EUR][1000 genomes]
rs1470686	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1597450	0.81[EUR][1000 genomes]
rs16907654	0.89[EUR][1000 genomes]
rs17294609	0.82[EUR][1000 genomes]
rs17294693	0.82[EUR][1000 genomes]
rs17295786	0.82[EUR][1000 genomes]
rs17296211	0.83[EUR][1000 genomes]
rs17296765	0.94[EUR][1000 genomes]
rs2044781	0.85[EUR][1000 genomes]
rs2403307	0.92[ASN][1000 genomes]
rs28733206	0.93[EUR][1000 genomes]
rs2920149	0.83[EUR][1000 genomes]
rs2957657	0.83[EUR][1000 genomes]
rs2957686	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35389379	0.92[ASN][1000 genomes]
rs4077089	0.95[EUR][1000 genomes]
rs61889783	0.82[EUR][1000 genomes]
rs61889785	0.82[EUR][1000 genomes]
rs61889795	0.81[EUR][1000 genomes]
rs61889796	0.81[EUR][1000 genomes]
rs61889802	0.83[EUR][1000 genomes]
rs61889815	0.82[EUR][1000 genomes]
rs61889816	0.82[EUR][1000 genomes]
rs61889817	0.83[EUR][1000 genomes]
rs61889836	0.84[EUR][1000 genomes]
rs61889840	0.87[EUR][1000 genomes]
rs61889842	0.88[EUR][1000 genomes]
rs61889843	0.90[EUR][1000 genomes]
rs61889845	0.89[EUR][1000 genomes]
rs61889846	0.89[EUR][1000 genomes]
rs61889847	0.89[EUR][1000 genomes]
rs61891762	0.93[EUR][1000 genomes]
rs61891764	0.90[EUR][1000 genomes]
rs61891767	0.90[EUR][1000 genomes]
rs61891768	0.89[EUR][1000 genomes]
rs61891770	0.87[EUR][1000 genomes]
rs61891771	0.89[EUR][1000 genomes]
rs61891773	0.89[EUR][1000 genomes]
rs61891775	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61891776	0.87[EUR][1000 genomes]
rs61891793	0.82[EUR][1000 genomes]
rs61892593	0.81[EUR][1000 genomes]
rs61892594	0.81[EUR][1000 genomes]
rs61892595	0.82[EUR][1000 genomes]
rs61892596	0.82[EUR][1000 genomes]
rs61892597	0.82[EUR][1000 genomes]
rs6484142	0.83[EUR][1000 genomes]
rs7103637	0.82[EUR][1000 genomes]
rs7107373	0.82[EUR][1000 genomes]
rs7108385	0.93[EUR][1000 genomes]
rs7109096	0.89[EUR][1000 genomes]
rs7123541	0.90[EUR][1000 genomes]
rs7125823	0.82[EUR][1000 genomes]
rs7129220	0.89[EUR][1000 genomes]
rs72850458	0.83[EUR][1000 genomes]
rs72851648	0.90[EUR][1000 genomes]
rs72851670	0.90[EUR][1000 genomes]
rs72851674	0.87[EUR][1000 genomes]
rs7930218	0.82[EUR][1000 genomes]
rs7933724	0.82[EUR][1000 genomes]
rs7935257	0.90[EUR][1000 genomes]
rs7941320	0.85[EUR][1000 genomes]
rs7941557	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7945990	0.82[EUR][1000 genomes]
rs7947210	0.82[EUR][1000 genomes]
rs7949974	0.90[EUR][1000 genomes]
rs896043	0.89[EUR][1000 genomes]
rs9705133	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10326800-10330800	Transcr. at gene 5' and 3'	NHLF	lung
2	chr11:10328000-10331000	Flanking Active TSS	Adipose Nuclei	Adipose
3	chr11:10328600-10330800	Weak transcription	Spleen	Spleen
4	chr11:10328600-10331000	Flanking Active TSS	Dnd41	blood
5	chr11:10329200-10331000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:10329400-10332200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:10329600-10330600	Flanking Active TSS	GM12878-XiMat	blood
8	chr11:10329800-10330600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
9	chr11:10329800-10330600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:10329800-10330600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:10329800-10330600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
12	chr11:10329800-10330600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:10329800-10330800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:10329800-10330800	Weak transcription	Aorta	Aorta
15	chr11:10329800-10330800	Weak transcription	Gastric	stomach
16	chr11:10329800-10330800	Flanking Active TSS	Osteobl	bone
17	chr11:10329800-10331000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr11:10329800-10331200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:10329800-10331200	Flanking Active TSS	Hela-S3	cervix
20	chr11:10329800-10332400	Enhancers	Fetal Heart	heart
21	chr11:10330000-10330600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:10330000-10330600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
23	chr11:10330000-10330600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr11:10330000-10330600	Weak transcription	Ovary	ovary
25	chr11:10330000-10330800	Enhancers	Brain Substantia Nigra	brain
26	chr11:10330000-10330800	Enhancers	Colonic Mucosa	Colon
27	chr11:10330000-10330800	Weak transcription	Esophagus	oesophagus
28	chr11:10330000-10330800	Bivalent Enhancer	Fetal Thymus	thymus
29	chr11:10330000-10330800	Enhancers	Psoas Muscle	Psoas
30	chr11:10330000-10330800	Weak transcription	Right Atrium	heart
31	chr11:10330000-10331000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:10330000-10331000	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr11:10330000-10331000	Enhancers	Brain Anterior Caudate	brain
34	chr11:10330000-10331000	Bivalent Enhancer	Fetal Lung	lung
35	chr11:10330000-10331200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr11:10330000-10331200	Bivalent Enhancer	Fetal Muscle Leg	muscle
37	chr11:10330000-10331200	Enhancers	Left Ventricle	heart
38	chr11:10330000-10331200	Flanking Active TSS	HepG2	liver
39	chr11:10330000-10331400	Enhancers	Lung	lung
40	chr11:10330000-10331400	Enhancers	Pancreas	Pancrea
41	chr11:10330000-10331600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:10330000-10331800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr11:10330000-10331800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr11:10330000-10331800	Enhancers	Liver	Liver
45	chr11:10330000-10331800	Enhancers	Duodenum Mucosa	Duodenum
46	chr11:10330000-10332200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr11:10330000-10332200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:10330000-10334400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr11:10330200-10330600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr11:10330200-10330600	Enhancers	H1 Cell Line	embryonic stem cell

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