Variant report

Variant	rs2957686
Chromosome Location	chr11:10357028-10357029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1450265	0.95[EUR][1000 genomes]
rs1450266	0.96[EUR][1000 genomes]
rs1450268	0.96[EUR][1000 genomes]
rs1450275	0.97[EUR][1000 genomes]
rs1450276	0.91[EUR][1000 genomes]
rs1470686	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1597450	0.88[EUR][1000 genomes]
rs16907654	0.97[EUR][1000 genomes]
rs17296211	0.83[EUR][1000 genomes]
rs17296765	0.92[EUR][1000 genomes]
rs2044781	0.93[EUR][1000 genomes]
rs28733206	0.95[EUR][1000 genomes]
rs2920149	0.81[EUR][1000 genomes]
rs2957657	0.80[EUR][1000 genomes]
rs2957680	0.92[ASN][1000 genomes]
rs4077089	0.91[EUR][1000 genomes]
rs4403799	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61889795	0.81[EUR][1000 genomes]
rs61889796	0.81[EUR][1000 genomes]
rs61889802	0.80[EUR][1000 genomes]
rs61889817	0.80[EUR][1000 genomes]
rs61889836	0.82[EUR][1000 genomes]
rs61889840	0.83[EUR][1000 genomes]
rs61889842	0.85[EUR][1000 genomes]
rs61889843	0.87[EUR][1000 genomes]
rs61889845	0.86[EUR][1000 genomes]
rs61889846	0.86[EUR][1000 genomes]
rs61889847	0.86[EUR][1000 genomes]
rs61891762	0.95[EUR][1000 genomes]
rs61891764	0.96[EUR][1000 genomes]
rs61891767	0.96[EUR][1000 genomes]
rs61891768	0.97[EUR][1000 genomes]
rs61891770	0.95[EUR][1000 genomes]
rs61891771	0.97[EUR][1000 genomes]
rs61891773	0.97[EUR][1000 genomes]
rs61891775	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891776	0.95[EUR][1000 genomes]
rs61891793	0.89[EUR][1000 genomes]
rs6484142	0.80[EUR][1000 genomes]
rs7108385	0.95[EUR][1000 genomes]
rs7109096	0.97[EUR][1000 genomes]
rs7123541	0.96[EUR][1000 genomes]
rs7129220	0.97[EUR][1000 genomes]
rs72850458	0.80[EUR][1000 genomes]
rs72851648	0.83[EUR][1000 genomes]
rs72851670	0.96[EUR][1000 genomes]
rs72851674	0.93[EUR][1000 genomes]
rs7935257	0.85[EUR][1000 genomes]
rs7941320	0.93[EUR][1000 genomes]
rs7941557	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949974	0.85[EUR][1000 genomes]
rs896043	0.97[EUR][1000 genomes]
rs9705133	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10348200-10370200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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