Variant report

Variant	rs61892593
Chromosome Location	chr11:10228353-10228354
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10227014..10228870-chr11:10386230..10387904,2	K562	blood:
2	chr11:10227925..10230421-chr11:10313078..10316314,3	MCF-7	breast:
3	chr11:10226516..10229103-chr11:10229118..10231466,3	MCF-7	breast:
4	chr11:10225918..10228486-chr11:10324033..10325945,2	MCF-7	breast:
5	chr11:10228223..10229821-chr11:10315025..10316568,2	MCF-7	breast:
6	chr11:10228277..10231249-chr11:10328543..10331201,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133812	Chromatin interaction
ENSG00000254554	Chromatin interaction
ENSG00000133805	Chromatin interaction

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs1372810	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450265	1.00[ASN][1000 genomes]
rs1450266	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450268	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450275	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1450276	1.00[ASN][1000 genomes]
rs16907654	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17292774	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17294609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17294693	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17295786	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17296211	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17296765	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17358721	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17358882	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17359382	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17360118	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28733206	1.00[ASN][1000 genomes]
rs2920149	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2957657	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4077089	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4403799	0.81[EUR][1000 genomes]
rs61877039	1.00[ASN][1000 genomes]
rs61877042	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61877044	1.00[ASN][1000 genomes]
rs61877046	1.00[ASN][1000 genomes]
rs61877050	1.00[ASN][1000 genomes]
rs61877054	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877263	0.85[EUR][1000 genomes]
rs61877264	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878586	1.00[ASN][1000 genomes]
rs61878635	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61878652	0.84[EUR][1000 genomes]
rs61878654	0.97[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878655	0.97[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878657	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878658	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878659	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61880160	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889795	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889796	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889802	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889815	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889816	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889817	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889836	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889840	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889842	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889843	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889845	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889846	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889847	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889956	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61889957	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891762	1.00[ASN][1000 genomes]
rs61891764	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891767	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891768	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891770	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61891771	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61891773	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891775	0.80[EUR][1000 genomes]
rs61891776	1.00[ASN][1000 genomes]
rs61891793	1.00[ASN][1000 genomes]
rs61892569	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892570	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892572	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892573	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892575	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484142	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66553354	1.00[ASN][1000 genomes]
rs7103637	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104591	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105355	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107373	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108187	1.00[ASN][1000 genomes]
rs7108385	1.00[ASN][1000 genomes]
rs7108546	0.91[AFR][1000 genomes]
rs7109096	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111544	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111647	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120043	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7122370	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7123467	0.97[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7123541	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7125823	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129220	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7131546	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850458	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851648	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851670	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851674	1.00[ASN][1000 genomes]
rs72858820	1.00[ASN][1000 genomes]
rs72858863	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72858902	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861738	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861762	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861767	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861799	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929332	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930218	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933724	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935257	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939096	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939531	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7945990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947210	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949974	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs896043	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9705133	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv515552	chr11:10226268-10228809	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10208000-10229000	Weak transcription	Aorta	Aorta
2	chr11:10208800-10229400	Weak transcription	NHLF	lung
3	chr11:10219000-10242200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:10223800-10229600	Weak transcription	Osteobl	bone
5	chr11:10225600-10228400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:10226800-10230000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr11:10227000-10230200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr11:10227000-10230200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr11:10227000-10230400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr11:10227200-10229000	Weak transcription	Ovary	ovary
11	chr11:10227200-10229200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:10227200-10230200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:10227400-10228400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr11:10227400-10235600	Weak transcription	Psoas Muscle	Psoas
15	chr11:10227400-10240000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:10227600-10228400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr11:10227600-10228400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:10227600-10228600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr11:10227600-10232200	Weak transcription	Right Atrium	heart
20	chr11:10227600-10240200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr11:10227800-10228800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr11:10227800-10228800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr11:10227800-10229400	Weak transcription	HepG2	liver
24	chr11:10227800-10229600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:10227800-10229600	Weak transcription	Liver	Liver
26	chr11:10227800-10230000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:10227800-10230200	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr11:10227800-10239800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr11:10227800-10240000	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr11:10227800-10242600	Weak transcription	Esophagus	oesophagus
31	chr11:10228000-10228400	Weak transcription	NHDF-Ad	bronchial
32	chr11:10228000-10229800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr11:10228200-10230400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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