Variant report

Variant	rs61877263
Chromosome Location	chr11:10180637-10180638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1372810	0.86[EUR][1000 genomes]
rs17292774	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17294609	0.86[EUR][1000 genomes]
rs17294693	0.86[EUR][1000 genomes]
rs17295786	0.86[EUR][1000 genomes]
rs17296211	0.85[EUR][1000 genomes]
rs17358721	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17358882	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17359382	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17360118	0.93[EUR][1000 genomes]
rs2920149	0.87[EUR][1000 genomes]
rs2957657	0.85[EUR][1000 genomes]
rs61877054	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61877264	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61878627	0.82[EUR][1000 genomes]
rs61878635	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61878652	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61878654	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61878655	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61878657	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61878658	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61878659	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61880160	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61889783	0.86[EUR][1000 genomes]
rs61889785	0.86[EUR][1000 genomes]
rs61889795	0.87[EUR][1000 genomes]
rs61889796	0.87[EUR][1000 genomes]
rs61889802	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61889815	0.86[EUR][1000 genomes]
rs61889816	0.86[EUR][1000 genomes]
rs61889817	0.85[EUR][1000 genomes]
rs61889836	0.84[EUR][1000 genomes]
rs61889840	0.85[EUR][1000 genomes]
rs61889842	0.84[EUR][1000 genomes]
rs61889843	0.82[EUR][1000 genomes]
rs61889845	0.83[EUR][1000 genomes]
rs61889846	0.83[EUR][1000 genomes]
rs61889847	0.83[EUR][1000 genomes]
rs61889956	0.98[EUR][1000 genomes]
rs61889957	0.96[EUR][1000 genomes]
rs61891764	0.80[AMR][1000 genomes]
rs61891767	0.80[AMR][1000 genomes]
rs61892569	0.93[EUR][1000 genomes]
rs61892570	0.93[EUR][1000 genomes]
rs61892572	0.91[EUR][1000 genomes]
rs61892573	0.91[EUR][1000 genomes]
rs61892575	0.89[EUR][1000 genomes]
rs61892593	0.85[EUR][1000 genomes]
rs61892594	0.85[EUR][1000 genomes]
rs61892595	0.86[EUR][1000 genomes]
rs61892596	0.86[EUR][1000 genomes]
rs61892597	0.86[EUR][1000 genomes]
rs6484142	0.85[EUR][1000 genomes]
rs7103637	0.86[EUR][1000 genomes]
rs7104591	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7105355	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7107373	0.86[EUR][1000 genomes]
rs7108546	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7111544	0.93[EUR][1000 genomes]
rs7111647	0.93[EUR][1000 genomes]
rs7120043	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7122370	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7123467	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7125823	0.86[EUR][1000 genomes]
rs7131546	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72850458	0.85[EUR][1000 genomes]
rs72851648	0.82[EUR][1000 genomes]
rs72851670	0.80[AMR][1000 genomes]
rs72858863	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72858902	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72861738	0.92[EUR][1000 genomes]
rs72861762	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72861767	0.89[EUR][1000 genomes]
rs72861799	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7929332	0.90[EUR][1000 genomes]
rs7930218	0.86[EUR][1000 genomes]
rs7933724	0.86[EUR][1000 genomes]
rs7935257	0.82[EUR][1000 genomes]
rs7939096	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7945990	0.86[EUR][1000 genomes]
rs7947210	0.86[EUR][1000 genomes]
rs7949974	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv975150	chr11:10174580-10182242	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10170600-10189000	Weak transcription	Left Ventricle	heart
2	chr11:10176200-10184000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:10177800-10183200	Weak transcription	Ovary	ovary
4	chr11:10177800-10183800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr11:10178000-10182200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:10178000-10182200	Weak transcription	HMEC	breast
7	chr11:10178000-10183600	Weak transcription	Right Ventricle	heart
8	chr11:10178200-10182200	Weak transcription	NHLF	lung
9	chr11:10178200-10182400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:10178200-10185400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:10178200-10213400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:10179800-10181200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr11:10180000-10181000	Enhancers	Hela-S3	cervix
14	chr11:10180200-10186200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:10180400-10181200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:10180600-10181800	Weak transcription	Osteobl	bone
17	chr11:10180600-10182000	Weak transcription	NHDF-Ad	bronchial
18	chr11:10180600-10182200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:10180600-10182400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:10180600-10182800	Weak transcription	HSMM	muscle

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