Variant report

Variant	rs2403307
Chromosome Location	chr11:10340942-10340943
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10335615..10338185-chr11:10340007..10342257,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11042683	0.88[YRI][hapmap]
rs13306112	1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13306113	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1470258	0.89[YRI][hapmap]
rs1822292	1.00[YRI][hapmap]
rs2403292	0.82[YRI][hapmap]
rs2920154	0.88[YRI][hapmap]
rs2957680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35389379	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4281477	0.82[YRI][hapmap]
rs4403799	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs4910095	0.82[YRI][hapmap]
rs58795846	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs59871004	1.00[AMR][1000 genomes]
rs7935934	1.00[YRI][hapmap]
rs7938491	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10330800-10344400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:10331400-10343800	Weak transcription	NHLF	lung
3	chr11:10331800-10344200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:10336400-10343400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr11:10336400-10344000	Weak transcription	Osteobl	bone
6	chr11:10336600-10343200	Weak transcription	Stomach Mucosa	stomach
7	chr11:10337800-10342200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:10337800-10343400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr11:10338400-10341800	Enhancers	Adipose Nuclei	Adipose
10	chr11:10338400-10342000	Enhancers	Fetal Thymus	thymus
11	chr11:10338400-10346800	Enhancers	NHDF-Ad	bronchial
12	chr11:10338600-10341000	Enhancers	Primary B cells from peripheral blood	blood
13	chr11:10338600-10341000	Enhancers	Ovary	ovary
14	chr11:10338600-10341400	Enhancers	Fetal Muscle Leg	muscle
15	chr11:10338600-10341600	Enhancers	Primary B cells from cord blood	blood
16	chr11:10338600-10341600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:10338600-10342200	Enhancers	HepG2	liver
18	chr11:10338600-10342400	Enhancers	Thymus	Thymus
19	chr11:10338600-10343000	Enhancers	Stomach Smooth Muscle	stomach
20	chr11:10338800-10341200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr11:10338800-10344000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:10338800-10344000	Weak transcription	HUVEC	blood vessel
23	chr11:10339000-10341200	Weak transcription	Fetal Lung	lung
24	chr11:10339000-10344000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr11:10339200-10341000	Weak transcription	Colon Smooth Muscle	Colon
26	chr11:10339200-10342800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:10339200-10344000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:10339200-10344400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr11:10339400-10344400	Weak transcription	Fetal Kidney	kidney
30	chr11:10339600-10342800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:10339600-10343400	Weak transcription	Placenta	Placenta
32	chr11:10339600-10344000	Weak transcription	Brain Anterior Caudate	brain
33	chr11:10339600-10344000	Weak transcription	Brain Substantia Nigra	brain
34	chr11:10339600-10348800	Weak transcription	Brain Hippocampus Middle	brain
35	chr11:10339800-10341200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:10340000-10341000	Enhancers	GM12878-XiMat	blood
37	chr11:10340000-10344000	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr11:10340200-10341600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr11:10340200-10342600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr11:10340200-10343400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr11:10340200-10344000	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr11:10340200-10344000	Weak transcription	Right Atrium	heart
43	chr11:10340200-10344200	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr11:10340200-10344200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr11:10340200-10344400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr11:10340200-10344400	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr11:10340200-10347400	Weak transcription	Pancreas	Pancrea
48	chr11:10340400-10341400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr11:10340400-10342200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr11:10340400-10343400	Weak transcription	Fetal Intestine Large	intestine

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