Variant report

Variant	rs2920154
Chromosome Location	chr11:10299321-10299322
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10160400	1.00[ASN][1000 genomes]
rs11042615	0.88[YRI][hapmap]
rs11042683	0.87[YRI][hapmap]
rs11822548	0.81[EUR][1000 genomes]
rs11824642	0.81[EUR][1000 genomes]
rs11827277	1.00[ASN][1000 genomes]
rs11828592	1.00[CEU][hapmap];0.91[ASN][1000 genomes]
rs12417184	0.82[YRI][hapmap]
rs13306112	0.88[YRI][hapmap]
rs1470258	0.88[YRI][hapmap]
rs16907460	0.91[ASN][1000 genomes]
rs16907505	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap]
rs16907507	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs16907525	1.00[ASN][1000 genomes]
rs17293593	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[ASN][1000 genomes]
rs17294292	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs17294511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17295800	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17295954	1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17361849	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368443	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368498	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1822290	0.88[YRI][hapmap]
rs1822292	0.88[YRI][hapmap]
rs2015150	0.81[AMR][1000 genomes]
rs2044145	0.88[YRI][hapmap]
rs2044146	1.00[YRI][hapmap]
rs2083712	1.00[YRI][hapmap]
rs2083713	1.00[YRI][hapmap]
rs2278629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs2278631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4515960	1.00[ASN][1000 genomes]
rs4910093	1.00[YRI][hapmap]
rs55650476	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55650931	1.00[ASN][1000 genomes]
rs55678570	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55771749	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55823443	0.91[ASN][1000 genomes]
rs55865301	0.91[ASN][1000 genomes]
rs55868496	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55925664	0.91[ASN][1000 genomes]
rs56244748	1.00[ASN][1000 genomes]
rs56287081	0.91[ASN][1000 genomes]
rs59235070	0.81[EUR][1000 genomes]
rs66593106	1.00[ASN][1000 genomes]
rs67257108	0.83[ASN][1000 genomes]
rs7105045	0.91[ASN][1000 genomes]
rs72850415	1.00[ASN][1000 genomes]
rs72850420	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850423	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850426	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850434	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850453	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850480	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851606	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851620	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851647	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72851665	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72851667	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72851668	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72851686	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72851689	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72852806	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72852812	0.86[AMR][1000 genomes]
rs72860544	0.91[ASN][1000 genomes]
rs72860557	0.91[ASN][1000 genomes]
rs72860561	0.91[ASN][1000 genomes]
rs72860566	0.91[ASN][1000 genomes]
rs72861704	0.91[ASN][1000 genomes]
rs72861713	1.00[ASN][1000 genomes]
rs72861720	1.00[ASN][1000 genomes]
rs72861722	1.00[ASN][1000 genomes]
rs72861724	1.00[ASN][1000 genomes]
rs72861731	1.00[ASN][1000 genomes]
rs72861743	1.00[ASN][1000 genomes]
rs72861747	1.00[ASN][1000 genomes]
rs72861754	1.00[ASN][1000 genomes]
rs72861755	1.00[ASN][1000 genomes]
rs72861758	1.00[ASN][1000 genomes]
rs72861773	1.00[ASN][1000 genomes]
rs72861780	1.00[ASN][1000 genomes]
rs72861781	1.00[ASN][1000 genomes]
rs72863321	1.00[ASN][1000 genomes]
rs7935934	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10268600-10300000	Weak transcription	Fetal Intestine Small	intestine
2	chr11:10278200-10309200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:10279000-10311400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr11:10285400-10303400	Weak transcription	Fetal Intestine Large	intestine
5	chr11:10287600-10306200	Weak transcription	Psoas Muscle	Psoas
6	chr11:10290000-10313400	Weak transcription	Fetal Brain Male	brain
7	chr11:10290800-10309000	Weak transcription	HSMMtube	muscle
8	chr11:10291200-10313600	Weak transcription	NHEK	skin
9	chr11:10291200-10314400	Weak transcription	HSMM	muscle
10	chr11:10291400-10309000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:10294200-10309600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:10294200-10311400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr11:10295600-10299400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr11:10295600-10299800	Weak transcription	Ovary	ovary
15	chr11:10295600-10306600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:10295600-10307000	Weak transcription	Colon Smooth Muscle	Colon
17	chr11:10295800-10304200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr11:10296800-10306600	Weak transcription	NHDF-Ad	bronchial
19	chr11:10297000-10306200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr11:10297000-10309600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr11:10297600-10299400	Enhancers	NHLF	lung
22	chr11:10297800-10303200	Weak transcription	Hela-S3	cervix
23	chr11:10297800-10309400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:10298200-10306000	Weak transcription	A549	lung
25	chr11:10298200-10307000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:10298200-10313400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:10298400-10306200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:10299000-10299600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:10299200-10299400	Enhancers	Small Intestine	intestine
30	chr11:10299200-10299600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr11:10299200-10299800	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr11:10299200-10299800	Enhancers	Brain Substantia Nigra	brain
33	chr11:10299200-10304600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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