Variant report

Variant	rs11824642
Chromosome Location	chr11:10353730-10353731
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11822548	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828592	1.00[CEU][hapmap]
rs16907505	1.00[CEU][hapmap]
rs16907507	1.00[CEU][hapmap]
rs17294511	1.00[CEU][hapmap]
rs17295800	1.00[CEU][hapmap]
rs17368443	0.81[EUR][1000 genomes]
rs17368498	0.81[EUR][1000 genomes]
rs1806908	1.00[ASN][1000 genomes]
rs2015150	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278629	1.00[CEU][hapmap]
rs2278631	1.00[CEU][hapmap]
rs2920154	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs55771749	0.81[EUR][1000 genomes]
rs56262739	0.87[ASN][1000 genomes]
rs56726683	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57189777	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59235070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60502169	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60743731	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851606	0.81[EUR][1000 genomes]
rs72851620	0.81[EUR][1000 genomes]
rs72851647	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851665	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851667	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851668	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851686	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851689	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72852806	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72852812	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72852835	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72852843	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10344600-10353800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:10345600-10354000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:10348200-10370200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:10350600-10354400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:10351600-10354800	Weak transcription	Adipose Nuclei	Adipose
6	chr11:10352200-10354400	Weak transcription	HepG2	liver
7	chr11:10353000-10354000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr11:10353200-10354800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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