Variant report
| Variant | rs60743731 |
|---|---|
| Chromosome Location | chr11:10367093-10367094 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11822548 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11824642 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11827387 | 0.82[AFR][1000 genomes] |
| rs1806908 | 1.00[ASN][1000 genomes] |
| rs2015150 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55777552 | 0.82[AFR][1000 genomes] |
| rs56262739 | 0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs56726683 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57189777 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59235070 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60502169 | 0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72851647 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72851665 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72851667 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72851668 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72851686 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72851689 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72852806 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72852812 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72852835 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72852843 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs73403938 | 0.82[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv430319 | chr11:10027543-10711224 | Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 75 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:10348200-10370200 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
