Variant report

Variant	rs1806908
Chromosome Location	chr11:10361300-10361301
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11822548	1.00[ASN][1000 genomes]
rs11824642	1.00[ASN][1000 genomes]
rs2015150	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56262739	0.87[ASN][1000 genomes]
rs56726683	1.00[ASN][1000 genomes]
rs57189777	1.00[ASN][1000 genomes]
rs59235070	1.00[ASN][1000 genomes]
rs60502169	1.00[ASN][1000 genomes]
rs60743731	1.00[ASN][1000 genomes]
rs72851647	1.00[ASN][1000 genomes]
rs72851665	1.00[ASN][1000 genomes]
rs72851667	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72851668	1.00[ASN][1000 genomes]
rs72851686	1.00[ASN][1000 genomes]
rs72851689	1.00[ASN][1000 genomes]
rs72852806	1.00[ASN][1000 genomes]
rs72852812	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72852835	1.00[ASN][1000 genomes]
rs72852843	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10348200-10370200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:10360600-10361400	Enhancers	Fetal Muscle Leg	muscle
3	chr11:10361200-10361600	Flanking Active TSS	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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