Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11822548	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824642	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368443	0.80[AMR][1000 genomes]
rs17368498	0.80[AMR][1000 genomes]
rs1806908	1.00[ASN][1000 genomes]
rs2015150	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55771749	0.80[AMR][1000 genomes]
rs56262739	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56726683	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57189777	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59235070	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60502169	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60743731	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851606	0.80[AMR][1000 genomes]
rs72851620	0.80[AMR][1000 genomes]
rs72851647	1.00[ASN][1000 genomes]
rs72851665	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851667	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851668	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851686	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851689	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72852806	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72852812	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72852843	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10348200-10370200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:10367400-10372000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:10368200-10370200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:10368400-10368600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:10368400-10369800	Weak transcription	HSMM	muscle

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