Variant report

Variant	rs72852806
Chromosome Location	chr11:10355051-10355052
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11822548	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824642	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17295800	0.80[AMR][1000 genomes]
rs17295954	0.80[AMR][1000 genomes]
rs17361849	0.80[AMR][1000 genomes]
rs17368443	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17368498	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1806908	1.00[ASN][1000 genomes]
rs2015150	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2920154	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55650476	0.80[AMR][1000 genomes]
rs55678570	0.80[AMR][1000 genomes]
rs55771749	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55868496	0.80[AMR][1000 genomes]
rs56262739	0.87[ASN][1000 genomes]
rs56726683	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57189777	1.00[ASN][1000 genomes]
rs59235070	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60502169	1.00[ASN][1000 genomes]
rs60743731	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850426	0.80[AMR][1000 genomes]
rs72850434	0.80[AMR][1000 genomes]
rs72850453	0.80[AMR][1000 genomes]
rs72850480	0.80[AMR][1000 genomes]
rs72851606	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72851620	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72851647	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851665	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851667	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851668	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851686	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72852812	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72852835	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72852843	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10348200-10370200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:10354800-10355800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:10354800-10355800	Enhancers	Adipose Nuclei	Adipose
4	chr11:10355000-10355400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links