Variant report

Variant	rs72850480
Chromosome Location	chr11:10290011-10290012
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10288226..10290717-chr11:10306819..10308555,2	MCF-7	breast:
2	chr11:10284644..10286841-chr11:10289235..10291262,2	MCF-7	breast:
3	chr11:9863900..9866036-chr11:10288714..10290795,2	K562	blood:

Variant related genes	Relation type
ENSG00000252568	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10160400	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827277	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828592	0.91[ASN][1000 genomes]
rs16907460	0.91[ASN][1000 genomes]
rs16907507	0.91[ASN][1000 genomes]
rs16907525	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17293593	0.91[ASN][1000 genomes]
rs17294292	0.91[ASN][1000 genomes]
rs17294511	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17295800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17295954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17361849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368443	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368498	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278629	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278631	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2920154	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4515960	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55650476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55650931	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55678570	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55771749	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55823443	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55865301	0.91[ASN][1000 genomes]
rs55868496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55925664	0.91[ASN][1000 genomes]
rs56244748	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56287081	0.91[ASN][1000 genomes]
rs66593106	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67257108	0.83[ASN][1000 genomes]
rs7105045	0.91[ASN][1000 genomes]
rs72850415	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850420	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850423	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850426	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850434	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851606	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851620	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851665	0.80[AMR][1000 genomes]
rs72851668	0.80[AMR][1000 genomes]
rs72851686	0.80[AMR][1000 genomes]
rs72851689	0.80[AMR][1000 genomes]
rs72852806	0.80[AMR][1000 genomes]
rs72852812	0.80[AMR][1000 genomes]
rs72860505	0.91[ASN][1000 genomes]
rs72860544	0.91[ASN][1000 genomes]
rs72860557	0.91[ASN][1000 genomes]
rs72860561	0.91[ASN][1000 genomes]
rs72860566	0.91[ASN][1000 genomes]
rs72861704	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861713	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861720	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861722	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861724	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861731	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861743	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861747	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861754	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861755	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861758	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861773	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861780	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861781	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72863308	0.82[AFR][1000 genomes]
rs72863310	0.82[AFR][1000 genomes]
rs72863321	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10268600-10300000	Weak transcription	Fetal Intestine Small	intestine
2	chr11:10277600-10292000	Weak transcription	Aorta	Aorta
3	chr11:10278200-10295200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:10278200-10309200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:10279000-10311400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr11:10279400-10296600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:10281200-10295000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr11:10283600-10291000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:10284000-10290400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:10285400-10303400	Weak transcription	Fetal Intestine Large	intestine
11	chr11:10285600-10290200	Weak transcription	NHLF	lung
12	chr11:10286000-10290600	Weak transcription	NH-A	brain
13	chr11:10287600-10306200	Weak transcription	Psoas Muscle	Psoas
14	chr11:10287800-10295400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr11:10288000-10290800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:10288000-10295000	Weak transcription	Ovary	ovary
17	chr11:10288200-10290400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:10288600-10294400	Weak transcription	Placenta	Placenta
19	chr11:10288800-10291200	Enhancers	HSMM	muscle
20	chr11:10289000-10291200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:10289000-10291200	Enhancers	A549	lung
22	chr11:10289000-10291400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:10289200-10290800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:10289200-10291000	Enhancers	NHDF-Ad	bronchial
25	chr11:10289200-10299200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr11:10289400-10290600	Weak transcription	HSMMtube	muscle
27	chr11:10289400-10299200	Weak transcription	Small Intestine	intestine
28	chr11:10289600-10291400	Enhancers	Osteobl	bone
29	chr11:10289800-10291200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:10290000-10290400	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr11:10290000-10291200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:10290000-10291200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr11:10290000-10313400	Weak transcription	Fetal Brain Male	brain

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