Variant report

Variant	rs72861758
Chromosome Location	chr11:10220051-10220052
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr11:10219838-10220120	U2OS	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10219263..10222663-chr11:10324916..10328525,3	MCF-7	breast:

Variant related genes	Relation type
SBF2	TF binding region
ENSG00000148926	Chromatin interaction
ENSG00000254554	Chromatin interaction

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10160400	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827277	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828592	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16907372	0.84[EUR][1000 genomes]
rs16907375	0.84[EUR][1000 genomes]
rs16907381	0.86[EUR][1000 genomes]
rs16907385	0.86[EUR][1000 genomes]
rs16907405	0.89[EUR][1000 genomes]
rs16907414	0.89[EUR][1000 genomes]
rs16907422	0.89[EUR][1000 genomes]
rs16907424	0.89[EUR][1000 genomes]
rs16907460	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16907505	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16907507	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16907525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17293593	0.91[ASN][1000 genomes]
rs17294292	0.91[ASN][1000 genomes]
rs17294511	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17295800	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17295954	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17361849	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368443	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17368498	1.00[ASN][1000 genomes]
rs2278629	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278631	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2920154	1.00[ASN][1000 genomes]
rs4515960	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55650476	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55650931	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55678570	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55771749	1.00[ASN][1000 genomes]
rs55797397	0.89[EUR][1000 genomes]
rs55823443	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55865301	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55868496	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55905435	0.84[EUR][1000 genomes]
rs55925664	0.91[ASN][1000 genomes]
rs55955707	0.89[EUR][1000 genomes]
rs56173862	0.82[EUR][1000 genomes]
rs56203621	0.86[AMR][1000 genomes]
rs56244748	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56275118	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56287081	0.91[ASN][1000 genomes]
rs56374204	0.82[EUR][1000 genomes]
rs56409115	0.86[EUR][1000 genomes]
rs66593106	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67257108	0.83[ASN][1000 genomes]
rs7105045	0.91[ASN][1000 genomes]
rs72850415	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850420	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850423	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850426	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850434	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850453	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850480	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851606	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72851620	1.00[ASN][1000 genomes]
rs72857188	0.84[EUR][1000 genomes]
rs72857189	0.84[EUR][1000 genomes]
rs72857190	0.84[EUR][1000 genomes]
rs72857192	0.84[EUR][1000 genomes]
rs72857193	0.84[EUR][1000 genomes]
rs72857194	0.84[EUR][1000 genomes]
rs72857196	0.84[EUR][1000 genomes]
rs72857201	0.84[EUR][1000 genomes]
rs72858804	0.84[EUR][1000 genomes]
rs72858806	0.84[EUR][1000 genomes]
rs72858808	0.84[EUR][1000 genomes]
rs72858814	0.86[EUR][1000 genomes]
rs72858835	0.89[EUR][1000 genomes]
rs72858836	0.89[EUR][1000 genomes]
rs72858837	0.89[EUR][1000 genomes]
rs72858840	0.89[EUR][1000 genomes]
rs72858841	0.89[EUR][1000 genomes]
rs72858842	0.89[EUR][1000 genomes]
rs72858845	0.89[EUR][1000 genomes]
rs72858870	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72860505	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72860544	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72860557	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72860561	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72860566	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861704	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861713	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861720	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861722	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861724	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861731	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861743	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861747	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861755	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861773	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861780	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861781	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72863308	0.91[AFR][1000 genomes]
rs72863310	0.91[AFR][1000 genomes]
rs72863321	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10188000-10222800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:10203800-10223800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr11:10205800-10220600	Weak transcription	A549	lung
4	chr11:10208000-10229000	Weak transcription	Aorta	Aorta
5	chr11:10208800-10229400	Weak transcription	NHLF	lung
6	chr11:10209000-10223200	Weak transcription	Left Ventricle	heart
7	chr11:10211000-10224600	Weak transcription	Primary B cells from cord blood	blood
8	chr11:10213600-10224400	Weak transcription	Hela-S3	cervix
9	chr11:10214000-10224800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:10214200-10225200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr11:10214800-10224400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr11:10215000-10226200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:10215600-10224400	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr11:10219000-10220400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr11:10219000-10242200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:10219200-10221200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:10219200-10222600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:10219600-10220600	Weak transcription	NHDF-Ad	bronchial
19	chr11:10219800-10222800	Weak transcription	Osteobl	bone
20	chr11:10219800-10226400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:10220000-10220400	Weak transcription	Psoas Muscle	Psoas
22	chr11:10220000-10220800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links