Variant report

Variant	rs72858840
Chromosome Location	chr11:10055246-10055247
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10051045..10052894-chr11:10053055..10055381,2	MCF-7	breast:

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs11826263	1.00[ASN][1000 genomes]
rs11828592	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12785752	1.00[ASN][1000 genomes]
rs16907355	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907372	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907375	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907381	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16907385	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907414	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907422	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907424	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907460	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907505	1.00[EUR][1000 genomes]
rs16907507	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907525	0.89[EUR][1000 genomes]
rs17272637	1.00[ASN][1000 genomes]
rs17272751	1.00[ASN][1000 genomes]
rs17294511	0.89[EUR][1000 genomes]
rs17357710	1.00[ASN][1000 genomes]
rs2278629	0.89[EUR][1000 genomes]
rs2278631	0.89[EUR][1000 genomes]
rs4472930	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4515960	0.89[EUR][1000 genomes]
rs4601768	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55650931	0.89[EUR][1000 genomes]
rs55797397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55823443	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55865301	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55905435	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55955707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56173862	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56203621	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56223901	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56244748	0.89[EUR][1000 genomes]
rs56272536	0.87[EUR][1000 genomes]
rs56275118	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56374204	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56379921	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56409115	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66593106	0.86[EUR][1000 genomes]
rs66803065	0.92[ASN][1000 genomes]
rs67446631	1.00[ASN][1000 genomes]
rs68010460	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72857111	1.00[ASN][1000 genomes]
rs72857124	1.00[ASN][1000 genomes]
rs72857130	1.00[ASN][1000 genomes]
rs72857132	1.00[ASN][1000 genomes]
rs72857147	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72857149	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72857152	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72857155	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72857188	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72857189	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72857190	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72857192	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72857193	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72857194	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72857196	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72857201	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72858804	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72858806	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72858808	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72858814	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72858828	1.00[ASN][1000 genomes]
rs72858835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72858836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72858837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72858841	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72858842	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72858845	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72858870	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72860505	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72860544	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72860557	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72860561	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72860566	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72861704	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72861713	0.89[EUR][1000 genomes]
rs72861720	0.89[EUR][1000 genomes]
rs72861722	0.89[EUR][1000 genomes]
rs72861724	0.89[EUR][1000 genomes]
rs72861731	0.89[EUR][1000 genomes]
rs72861743	0.89[EUR][1000 genomes]
rs72861747	0.89[EUR][1000 genomes]
rs72861754	0.89[EUR][1000 genomes]
rs72861755	0.89[EUR][1000 genomes]
rs72861758	0.89[EUR][1000 genomes]
rs72861773	0.89[EUR][1000 genomes]
rs72861780	0.86[EUR][1000 genomes]
rs72861781	0.86[EUR][1000 genomes]
rs72863321	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv553475	chr11:10019879-10059623	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv553476	chr11:10024311-10117435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9991200-10060000	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:10001400-10066200	Weak transcription	Pancreas	Pancrea
3	chr11:10030600-10065800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:10035200-10065800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr11:10036000-10055600	Weak transcription	NHEK	skin
6	chr11:10036200-10062800	Weak transcription	Adipose Nuclei	Adipose
7	chr11:10040400-10065800	Weak transcription	HSMM	muscle
8	chr11:10042000-10055800	Weak transcription	HMEC	breast
9	chr11:10042200-10064400	Weak transcription	Fetal Intestine Small	intestine
10	chr11:10042200-10066000	Weak transcription	Fetal Muscle Leg	muscle
11	chr11:10042200-10066000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr11:10042200-10066200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr11:10042600-10066000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr11:10043400-10065600	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr11:10043800-10061000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr11:10043800-10063800	Weak transcription	Primary T cells from cord blood	blood
17	chr11:10043800-10065400	Weak transcription	A549	lung
18	chr11:10043800-10065600	Weak transcription	HepG2	liver
19	chr11:10046400-10065800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr11:10046400-10065800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:10048600-10064600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:10048800-10061200	Weak transcription	HUVEC	blood vessel
23	chr11:10049200-10063200	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr11:10049200-10065000	Weak transcription	Dnd41	blood
25	chr11:10049400-10065600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr11:10049800-10065000	Weak transcription	Fetal Intestine Large	intestine
27	chr11:10049800-10065600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr11:10049800-10066000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr11:10049800-10066000	Weak transcription	Fetal Kidney	kidney
30	chr11:10050200-10055600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr11:10050200-10059000	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr11:10050200-10066000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr11:10050200-10066800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr11:10050600-10064200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr11:10050600-10065000	Weak transcription	Placenta	Placenta
36	chr11:10051400-10057200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:10051400-10062200	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr11:10051400-10063400	Weak transcription	Liver	Liver
39	chr11:10052000-10062600	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr11:10053200-10055400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr11:10053200-10056600	Enhancers	NHDF-Ad	bronchial
42	chr11:10053400-10056000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:10053400-10056200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:10053800-10055600	Enhancers	Muscle Satellite Cultured Cells	--
45	chr11:10053800-10055800	Enhancers	Osteobl	bone
46	chr11:10053800-10056000	Enhancers	NHLF	lung
47	chr11:10054200-10055800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr11:10054200-10063200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr11:10054400-10055600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr11:10054600-10059600	Weak transcription	Fetal Lung	lung

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