The 2.0 version of rSNPBase

Variant report

Variant rs72858828
Chromosome Location chr11:10049800-10049801
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:90 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:9981400-10051600 Weak transcription Aorta Aorta
2 chr11:9991200-10060000 Weak transcription Colon Smooth Muscle Colon
3 chr11:10001400-10066200 Weak transcription Pancreas Pancrea
4 chr11:10010600-10051200 Weak transcription Ovary ovary
5 chr11:10024800-10054000 Weak transcription Hela-S3 cervix
6 chr11:10030600-10051400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
7 chr11:10030600-10054000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
8 chr11:10030600-10065800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr11:10035200-10065800 Weak transcription Stomach Smooth Muscle stomach
10 chr11:10035400-10051200 Weak transcription Psoas Muscle Psoas
11 chr11:10035800-10052800 Weak transcription Spleen Spleen
12 chr11:10036000-10055600 Weak transcription NHEK skin
13 chr11:10036200-10062800 Weak transcription Adipose Nuclei Adipose
14 chr11:10040400-10065800 Weak transcription HSMM muscle
15 chr11:10042000-10052200 Weak transcription Esophagus oesophagus
16 chr11:10042000-10052800 Weak transcription Lung lung
17 chr11:10042000-10053400 Weak transcription Rectal Mucosa Donor 31 rectum
18 chr11:10042000-10055800 Weak transcription HMEC breast
19 chr11:10042200-10054800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr11:10042200-10064400 Weak transcription Fetal Intestine Small intestine
21 chr11:10042200-10066000 Weak transcription Fetal Muscle Leg muscle
22 chr11:10042200-10066000 Weak transcription Skeletal Muscle Male skeletal muscle
23 chr11:10042200-10066200 Weak transcription Rectal Smooth Muscle rectum
24 chr11:10042600-10066000 Weak transcription Duodenum Smooth Muscle Duodenum
25 chr11:10042800-10054200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
26 chr11:10043400-10051400 Weak transcription Primary B cells from cord blood blood
27 chr11:10043400-10051800 Weak transcription iPS-20b Cell Line embryonic stem cell
28 chr11:10043400-10052000 Weak transcription Primary T helper cells PMA-I stimulated --
29 chr11:10043400-10065600 Weak transcription Primary T helper cells fromperipheralblood blood
30 chr11:10043600-10050200 Weak transcription Sigmoid Colon Sigmoid Colon
31 chr11:10043800-10054400 Weak transcription Primary hematopoietic stem cells short term culture blood
32 chr11:10043800-10061000 Weak transcription Primary hematopoietic stem cells blood
33 chr11:10043800-10063800 Weak transcription Primary T cells from cord blood blood
34 chr11:10043800-10065400 Weak transcription A549 lung
35 chr11:10043800-10065600 Weak transcription HepG2 liver
36 chr11:10044600-10051200 Weak transcription Thymus Thymus
37 chr11:10044600-10051200 Weak transcription HSMMtube muscle
38 chr11:10045400-10052800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
39 chr11:10045800-10051400 Strong transcription Liver Liver
40 chr11:10045800-10052600 Weak transcription Fetal Brain Female brain
41 chr11:10046200-10053200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr11:10046400-10051600 Weak transcription HUES48 Cell Line embryonic stem cell
43 chr11:10046400-10054000 Weak transcription HUES6 Cell Line embryonic stem cell
44 chr11:10046400-10065800 Weak transcription iPS-18 Cell Line embryonic stem cell
45 chr11:10046400-10065800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
46 chr11:10047000-10049800 Strong transcription Cortex derived primary cultured neurospheres brain
47 chr11:10047000-10051400 Strong transcription Primary monocytes fromperipheralblood blood
48 chr11:10047600-10050600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
49 chr11:10047600-10052000 Strong transcription Monocytes-CD14+_RO01746 blood
50 chr11:10047800-10050200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015