Variant report

Variant	rs56275118
Chromosome Location	chr11:10079004-10079005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10160400	0.91[ASN][1000 genomes]
rs11826263	0.82[ASN][1000 genomes]
rs11827277	0.91[ASN][1000 genomes]
rs11828592	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12785752	0.82[ASN][1000 genomes]
rs16907355	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907372	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907375	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907381	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16907385	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907405	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907414	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907422	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907424	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907460	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907505	1.00[EUR][1000 genomes]
rs16907507	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907525	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17272637	0.82[ASN][1000 genomes]
rs17272751	0.82[ASN][1000 genomes]
rs17293593	0.82[ASN][1000 genomes]
rs17294292	0.82[ASN][1000 genomes]
rs17294511	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17295800	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17357710	0.82[ASN][1000 genomes]
rs2278629	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2278631	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4472930	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4515960	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4601768	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55650476	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55650931	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55678570	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55797397	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55823443	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55865301	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55868496	0.82[EUR][1000 genomes]
rs55905435	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55925664	0.82[ASN][1000 genomes]
rs55955707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56173862	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56203621	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56223901	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56244748	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56272536	0.87[EUR][1000 genomes]
rs56287081	0.82[ASN][1000 genomes]
rs56374204	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56379921	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56409115	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66593106	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67257108	0.92[ASN][1000 genomes]
rs67446631	0.82[ASN][1000 genomes]
rs68010460	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7105045	0.82[ASN][1000 genomes]
rs72850415	0.91[ASN][1000 genomes]
rs72850420	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72850423	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72850426	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72850434	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72850453	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72857111	0.82[ASN][1000 genomes]
rs72857124	0.82[ASN][1000 genomes]
rs72857130	0.82[ASN][1000 genomes]
rs72857132	0.82[ASN][1000 genomes]
rs72857147	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72857149	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857152	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857155	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857188	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857189	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857190	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857192	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857193	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857194	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857196	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857201	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858804	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858806	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858808	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858814	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858828	0.82[ASN][1000 genomes]
rs72858835	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858836	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858837	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858841	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858842	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858845	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858870	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860505	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860544	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860557	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860561	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860566	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861704	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861713	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861720	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861722	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861724	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861731	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861743	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861747	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861754	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861755	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861758	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861773	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861780	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861781	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72863321	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv553476	chr11:10024311-10117435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10072400-10101200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:10074000-10089200	Weak transcription	Ovary	ovary
3	chr11:10074000-10098200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:10074200-10079200	Weak transcription	Osteobl	bone
5	chr11:10074400-10079200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:10078600-10080000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:10078800-10079400	Enhancers	Lung	lung
8	chr11:10079000-10079600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:10079000-10080400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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