Variant report

Variant	rs7105045
Chromosome Location	chr11:10193521-10193522
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10160400	0.91[ASN][1000 genomes]
rs10840378	0.91[EUR][1000 genomes]
rs11827277	0.91[ASN][1000 genomes]
rs11828592	0.82[ASN][1000 genomes]
rs1442739	0.94[EUR][1000 genomes]
rs1442740	0.92[EUR][1000 genomes]
rs1470259	0.94[EUR][1000 genomes]
rs1470260	0.94[EUR][1000 genomes]
rs16907460	0.82[ASN][1000 genomes]
rs16907507	0.82[ASN][1000 genomes]
rs16907525	0.91[ASN][1000 genomes]
rs17293593	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17294292	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17294511	0.91[ASN][1000 genomes]
rs17295800	0.91[ASN][1000 genomes]
rs17295954	0.91[ASN][1000 genomes]
rs17361849	0.91[ASN][1000 genomes]
rs17368443	0.91[ASN][1000 genomes]
rs17368498	0.91[ASN][1000 genomes]
rs2278629	0.91[ASN][1000 genomes]
rs2278631	0.91[ASN][1000 genomes]
rs2920150	0.85[EUR][1000 genomes]
rs2920151	0.85[EUR][1000 genomes]
rs2920152	0.85[EUR][1000 genomes]
rs2920154	0.91[ASN][1000 genomes]
rs4515960	0.91[ASN][1000 genomes]
rs4910112	0.94[EUR][1000 genomes]
rs4910113	0.92[EUR][1000 genomes]
rs4910114	0.94[EUR][1000 genomes]
rs4910116	0.94[EUR][1000 genomes]
rs55650476	0.91[ASN][1000 genomes]
rs55650931	0.91[ASN][1000 genomes]
rs55678570	0.91[ASN][1000 genomes]
rs55771749	0.91[ASN][1000 genomes]
rs55823443	0.82[ASN][1000 genomes]
rs55865301	0.82[ASN][1000 genomes]
rs55879783	0.94[EUR][1000 genomes]
rs55925664	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56035322	0.94[EUR][1000 genomes]
rs56244748	0.91[ASN][1000 genomes]
rs56275118	0.82[ASN][1000 genomes]
rs56287081	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56352102	0.94[EUR][1000 genomes]
rs57975523	0.94[EUR][1000 genomes]
rs59033026	0.94[EUR][1000 genomes]
rs59090117	0.94[EUR][1000 genomes]
rs59807815	0.94[EUR][1000 genomes]
rs61889814	0.94[EUR][1000 genomes]
rs66593106	0.91[ASN][1000 genomes]
rs67257108	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7112413	0.94[EUR][1000 genomes]
rs72850415	0.91[ASN][1000 genomes]
rs72850420	0.91[ASN][1000 genomes]
rs72850423	0.91[ASN][1000 genomes]
rs72850426	0.91[ASN][1000 genomes]
rs72850434	0.91[ASN][1000 genomes]
rs72850453	0.91[ASN][1000 genomes]
rs72850480	0.91[ASN][1000 genomes]
rs72851606	0.91[ASN][1000 genomes]
rs72851620	0.91[ASN][1000 genomes]
rs72858870	0.82[ASN][1000 genomes]
rs72860505	0.82[ASN][1000 genomes]
rs72860544	0.82[ASN][1000 genomes]
rs72860557	0.82[ASN][1000 genomes]
rs72860561	0.82[ASN][1000 genomes]
rs72860566	0.82[ASN][1000 genomes]
rs72861704	0.82[ASN][1000 genomes]
rs72861713	0.91[ASN][1000 genomes]
rs72861720	0.91[ASN][1000 genomes]
rs72861722	0.91[ASN][1000 genomes]
rs72861724	0.91[ASN][1000 genomes]
rs72861731	0.91[ASN][1000 genomes]
rs72861743	0.91[ASN][1000 genomes]
rs72861747	0.91[ASN][1000 genomes]
rs72861754	0.91[ASN][1000 genomes]
rs72861755	0.91[ASN][1000 genomes]
rs72861758	0.91[ASN][1000 genomes]
rs72861773	0.91[ASN][1000 genomes]
rs72861780	0.91[ASN][1000 genomes]
rs72861781	0.91[ASN][1000 genomes]
rs72863321	0.91[ASN][1000 genomes]
rs73419149	0.94[EUR][1000 genomes]
rs7935252	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7941511	0.93[EUR][1000 genomes]
rs7947059	0.94[EUR][1000 genomes]
rs9804478	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10178200-10213400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:10184600-10211400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:10186200-10209200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:10188000-10222800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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