Variant report

Variant	rs2920150
Chromosome Location	chr11:10296653-10296654
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10260654..10262324-chr11:10295566..10297220,2	MCF-7	breast:
2	chr11:10293712..10297432-chr11:10324720..10326890,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148926	Chromatin interaction
ENSG00000254554	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10770100	0.86[ASN][1000 genomes]
rs10840378	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042682	0.86[ASN][1000 genomes]
rs11042685	0.86[ASN][1000 genomes]
rs11607447	0.86[ASN][1000 genomes]
rs12281432	0.86[ASN][1000 genomes]
rs1372809	0.86[ASN][1000 genomes]
rs1442739	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1442740	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1470259	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1470260	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17293593	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17294292	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs17295786	0.88[YRI][hapmap]
rs2083714	0.86[ASN][1000 genomes]
rs2197170	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs2920149	0.81[AFR][1000 genomes]
rs2920151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2920152	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2957657	0.87[YRI][hapmap]
rs4258371	0.86[ASN][1000 genomes]
rs4430500	0.86[ASN][1000 genomes]
rs4550215	0.81[ASN][1000 genomes]
rs4553358	0.86[ASN][1000 genomes]
rs4612801	0.86[ASN][1000 genomes]
rs4909923	0.86[ASN][1000 genomes]
rs4910104	0.86[ASN][1000 genomes]
rs4910109	0.86[ASN][1000 genomes]
rs4910112	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910113	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910114	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910116	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55879783	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55925664	0.85[EUR][1000 genomes]
rs56035322	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56287081	0.85[EUR][1000 genomes]
rs56352102	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57975523	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59033026	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59090117	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59807815	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889814	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105045	0.85[EUR][1000 genomes]
rs7112413	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117478	0.86[ASN][1000 genomes]
rs716804	0.86[ASN][1000 genomes]
rs73419149	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935252	0.85[EUR][1000 genomes]
rs7937758	0.86[ASN][1000 genomes]
rs7941511	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947059	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9804478	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10268600-10300000	Weak transcription	Fetal Intestine Small	intestine
2	chr11:10278200-10309200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:10279000-10311400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr11:10285400-10303400	Weak transcription	Fetal Intestine Large	intestine
5	chr11:10287600-10306200	Weak transcription	Psoas Muscle	Psoas
6	chr11:10289200-10299200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:10289400-10299200	Weak transcription	Small Intestine	intestine
8	chr11:10290000-10313400	Weak transcription	Fetal Brain Male	brain
9	chr11:10290800-10309000	Weak transcription	HSMMtube	muscle
10	chr11:10291200-10313600	Weak transcription	NHEK	skin
11	chr11:10291200-10314400	Weak transcription	HSMM	muscle
12	chr11:10291400-10309000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:10294200-10298400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:10294200-10309600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:10294200-10311400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr11:10295200-10297600	Enhancers	Adipose Nuclei	Adipose
17	chr11:10295600-10297200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr11:10295600-10299400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr11:10295600-10299800	Weak transcription	Ovary	ovary
20	chr11:10295600-10306600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:10295600-10307000	Weak transcription	Colon Smooth Muscle	Colon
22	chr11:10295800-10296800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr11:10295800-10296800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:10295800-10297400	Weak transcription	A549	lung
25	chr11:10295800-10297600	Weak transcription	NHLF	lung
26	chr11:10295800-10297600	Weak transcription	Osteobl	bone
27	chr11:10295800-10298000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:10295800-10304200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr11:10296000-10297200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:10296200-10297000	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr11:10296200-10297000	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr11:10296400-10296800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:10296600-10296800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:10296600-10296800	Enhancers	NHDF-Ad	bronchial
35	chr11:10296600-10297000	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr11:10296600-10298200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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