Variant report

Variant	rs4910113
Chromosome Location	chr11:10269178-10269179
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10770100	0.86[ASN][1000 genomes]
rs10840378	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042682	0.86[ASN][1000 genomes]
rs11042685	0.86[ASN][1000 genomes]
rs11607447	0.86[ASN][1000 genomes]
rs12281432	0.86[ASN][1000 genomes]
rs1372809	0.86[ASN][1000 genomes]
rs1442739	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1442740	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1470259	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1470260	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17293593	0.91[EUR][1000 genomes]
rs17294292	0.92[EUR][1000 genomes]
rs2083714	0.86[ASN][1000 genomes]
rs2197170	0.86[ASN][1000 genomes]
rs2920150	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2920151	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2920152	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4258371	0.86[ASN][1000 genomes]
rs4430500	0.86[ASN][1000 genomes]
rs4550215	0.81[ASN][1000 genomes]
rs4553358	0.86[ASN][1000 genomes]
rs4612801	0.86[ASN][1000 genomes]
rs4909923	0.86[ASN][1000 genomes]
rs4910104	0.86[ASN][1000 genomes]
rs4910109	0.86[ASN][1000 genomes]
rs4910112	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910114	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910116	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55879783	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55925664	0.92[EUR][1000 genomes]
rs56035322	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56287081	0.92[EUR][1000 genomes]
rs56352102	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57975523	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59033026	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59090117	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59807815	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889814	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67257108	0.85[EUR][1000 genomes]
rs7105045	0.92[EUR][1000 genomes]
rs7112413	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117478	0.86[ASN][1000 genomes]
rs716804	0.86[ASN][1000 genomes]
rs73419149	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928530	0.84[EUR][1000 genomes]
rs7935252	0.92[EUR][1000 genomes]
rs7937758	0.86[ASN][1000 genomes]
rs7941511	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947059	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9804478	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv8789	chr11:10263385-10275029	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10254000-10276200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:10254400-10277400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr11:10255600-10277200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr11:10255600-10279000	Weak transcription	Small Intestine	intestine
5	chr11:10255800-10277400	Weak transcription	HSMM	muscle
6	chr11:10256000-10270800	Weak transcription	NH-A	brain
7	chr11:10256600-10269600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr11:10259200-10280200	Weak transcription	A549	lung
9	chr11:10262400-10271800	Weak transcription	NHDF-Ad	bronchial
10	chr11:10263600-10273400	Weak transcription	Spleen	Spleen
11	chr11:10263600-10280400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:10263800-10280200	Weak transcription	Ovary	ovary
13	chr11:10264600-10277400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:10264600-10280400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:10264600-10280800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:10264800-10282800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:10266000-10270600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr11:10266600-10272600	Weak transcription	Fetal Stomach	stomach
19	chr11:10267000-10269600	Weak transcription	Pancreas	Pancrea
20	chr11:10268400-10269600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:10268400-10269800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:10268600-10269200	Weak transcription	Left Ventricle	heart
23	chr11:10268600-10271000	Weak transcription	Fetal Lung	lung
24	chr11:10268600-10276600	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr11:10268600-10300000	Weak transcription	Fetal Intestine Small	intestine
26	chr11:10268800-10274800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:10268800-10276600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:10269000-10269200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:10269000-10269800	Weak transcription	Osteobl	bone
30	chr11:10269000-10271200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:10269000-10277200	Weak transcription	NHLF	lung

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