Variant report

Variant	rs7928530
Chromosome Location	chr11:10251841-10251842
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10840378	0.83[EUR][1000 genomes]
rs1442739	0.85[EUR][1000 genomes]
rs1442740	0.83[EUR][1000 genomes]
rs1470259	0.85[EUR][1000 genomes]
rs1470260	0.85[EUR][1000 genomes]
rs4910112	0.85[EUR][1000 genomes]
rs4910113	0.84[EUR][1000 genomes]
rs4910114	0.85[EUR][1000 genomes]
rs4910116	0.85[EUR][1000 genomes]
rs55879783	0.85[EUR][1000 genomes]
rs56035322	0.85[EUR][1000 genomes]
rs56352102	0.85[EUR][1000 genomes]
rs57975523	0.85[EUR][1000 genomes]
rs59033026	0.85[EUR][1000 genomes]
rs59090117	0.85[EUR][1000 genomes]
rs59807815	0.85[EUR][1000 genomes]
rs61889814	0.85[EUR][1000 genomes]
rs7112413	0.85[EUR][1000 genomes]
rs73419149	0.85[EUR][1000 genomes]
rs7941511	0.85[EUR][1000 genomes]
rs7947059	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10231000-10254400	Weak transcription	NHDF-Ad	bronchial
2	chr11:10231000-10254400	Weak transcription	NHLF	lung
3	chr11:10235400-10263400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:10240600-10259800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:10241000-10253600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:10241200-10252800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:10241200-10255200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:10241800-10254800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:10242400-10253600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:10242600-10252800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:10247800-10254200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:10247800-10255200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:10247800-10259200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:10248000-10253400	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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