Variant report

Variant	rs72861713
Chromosome Location	chr11:10183582-10183583
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10160400	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827277	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828592	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16907372	0.84[EUR][1000 genomes]
rs16907375	0.84[EUR][1000 genomes]
rs16907381	0.86[EUR][1000 genomes]
rs16907385	0.86[EUR][1000 genomes]
rs16907405	0.89[EUR][1000 genomes]
rs16907414	0.89[EUR][1000 genomes]
rs16907422	0.89[EUR][1000 genomes]
rs16907424	0.89[EUR][1000 genomes]
rs16907460	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16907505	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16907507	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16907525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17293593	0.91[ASN][1000 genomes]
rs17294292	0.91[ASN][1000 genomes]
rs17294511	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17295800	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17295954	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17361849	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368443	1.00[ASN][1000 genomes]
rs17368498	1.00[ASN][1000 genomes]
rs2278629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278631	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2920154	1.00[ASN][1000 genomes]
rs4515960	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55650476	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55650931	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55678570	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55771749	1.00[ASN][1000 genomes]
rs55797397	0.89[EUR][1000 genomes]
rs55823443	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55865301	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55868496	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55905435	0.84[EUR][1000 genomes]
rs55925664	0.91[ASN][1000 genomes]
rs55955707	0.89[EUR][1000 genomes]
rs56173862	0.82[EUR][1000 genomes]
rs56203621	0.86[AMR][1000 genomes]
rs56244748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56275118	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56287081	0.91[ASN][1000 genomes]
rs56374204	0.82[EUR][1000 genomes]
rs56409115	0.86[EUR][1000 genomes]
rs66593106	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67257108	0.83[ASN][1000 genomes]
rs7105045	0.91[ASN][1000 genomes]
rs72850415	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850420	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850423	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850426	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850434	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850453	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850480	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851606	1.00[ASN][1000 genomes]
rs72851620	1.00[ASN][1000 genomes]
rs72857147	0.81[ASN][1000 genomes]
rs72857188	0.84[EUR][1000 genomes]
rs72857189	0.84[EUR][1000 genomes]
rs72857190	0.84[EUR][1000 genomes]
rs72857192	0.84[EUR][1000 genomes]
rs72857193	0.84[EUR][1000 genomes]
rs72857194	0.84[EUR][1000 genomes]
rs72857196	0.84[EUR][1000 genomes]
rs72857201	0.84[EUR][1000 genomes]
rs72858804	0.84[EUR][1000 genomes]
rs72858806	0.84[EUR][1000 genomes]
rs72858808	0.84[EUR][1000 genomes]
rs72858814	0.86[EUR][1000 genomes]
rs72858835	0.89[EUR][1000 genomes]
rs72858836	0.89[EUR][1000 genomes]
rs72858837	0.89[EUR][1000 genomes]
rs72858840	0.89[EUR][1000 genomes]
rs72858841	0.89[EUR][1000 genomes]
rs72858842	0.89[EUR][1000 genomes]
rs72858845	0.89[EUR][1000 genomes]
rs72858870	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72860505	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72860544	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72860557	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72860561	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72860566	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861704	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861743	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861747	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861754	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861755	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861758	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861773	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861780	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861781	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72863308	0.91[AFR][1000 genomes]
rs72863310	0.91[AFR][1000 genomes]
rs72863321	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10170600-10189000	Weak transcription	Left Ventricle	heart
2	chr11:10176200-10184000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:10177800-10183800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr11:10178000-10183600	Weak transcription	Right Ventricle	heart
5	chr11:10178200-10185400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:10178200-10213400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:10180200-10186200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:10181200-10191400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:10181800-10183800	Enhancers	Osteobl	bone
10	chr11:10182000-10186600	Enhancers	NHDF-Ad	bronchial
11	chr11:10182000-10187400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:10182200-10183600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:10182200-10184600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:10182200-10185800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:10182400-10183600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:10182400-10183600	Enhancers	Adipose Nuclei	Adipose
17	chr11:10182400-10184400	Weak transcription	NHLF	lung
18	chr11:10182800-10184600	Enhancers	HSMMtube	muscle
19	chr11:10183000-10184600	Enhancers	Brain Substantia Nigra	brain
20	chr11:10183000-10185000	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr11:10183000-10186000	Weak transcription	Hela-S3	cervix
22	chr11:10183000-10186200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr11:10183000-10186800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr11:10183200-10183600	Enhancers	Ovary	ovary
25	chr11:10183200-10184200	Weak transcription	Colon Smooth Muscle	Colon
26	chr11:10183200-10185400	Weak transcription	NHEK	skin
27	chr11:10183200-10186400	Weak transcription	A549	lung

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