Variant report

Variant	rs72850434
Chromosome Location	chr11:10271607-10271608
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10160400	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827277	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828592	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16907460	0.91[ASN][1000 genomes]
rs16907505	0.82[EUR][1000 genomes]
rs16907507	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16907525	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17293593	0.91[ASN][1000 genomes]
rs17294292	0.91[ASN][1000 genomes]
rs17294511	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17295800	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17295954	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17361849	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368443	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368498	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278629	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278631	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2920154	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4515960	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55650476	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55650931	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55678570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55771749	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55823443	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55865301	0.91[ASN][1000 genomes]
rs55868496	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55925664	0.91[ASN][1000 genomes]
rs56244748	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56275118	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56287081	0.91[ASN][1000 genomes]
rs66593106	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67257108	0.83[ASN][1000 genomes]
rs7105045	0.91[ASN][1000 genomes]
rs72850415	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850420	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850423	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850453	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850480	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851606	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851620	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851665	0.80[AMR][1000 genomes]
rs72851668	0.80[AMR][1000 genomes]
rs72851686	0.80[AMR][1000 genomes]
rs72851689	0.80[AMR][1000 genomes]
rs72852806	0.80[AMR][1000 genomes]
rs72852812	0.80[AMR][1000 genomes]
rs72860505	0.91[ASN][1000 genomes]
rs72860544	0.91[ASN][1000 genomes]
rs72860557	0.91[ASN][1000 genomes]
rs72860561	0.91[ASN][1000 genomes]
rs72860566	0.91[ASN][1000 genomes]
rs72861704	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861713	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861720	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861722	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861724	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861731	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861743	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861747	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861754	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861755	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861758	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861773	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861780	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861781	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72863308	0.91[AFR][1000 genomes]
rs72863310	0.91[AFR][1000 genomes]
rs72863321	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv8789	chr11:10263385-10275029	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10254000-10276200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:10254400-10277400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr11:10255600-10277200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr11:10255600-10279000	Weak transcription	Small Intestine	intestine
5	chr11:10255800-10277400	Weak transcription	HSMM	muscle
6	chr11:10259200-10280200	Weak transcription	A549	lung
7	chr11:10262400-10271800	Weak transcription	NHDF-Ad	bronchial
8	chr11:10263600-10273400	Weak transcription	Spleen	Spleen
9	chr11:10263600-10280400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:10263800-10280200	Weak transcription	Ovary	ovary
11	chr11:10264600-10277400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:10264600-10280400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:10264600-10280800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:10264800-10282800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:10266600-10272600	Weak transcription	Fetal Stomach	stomach
16	chr11:10268600-10276600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr11:10268600-10300000	Weak transcription	Fetal Intestine Small	intestine
18	chr11:10268800-10274800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:10268800-10276600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr11:10269000-10277200	Weak transcription	NHLF	lung
21	chr11:10269200-10276600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:10269800-10283000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:10270600-10271800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr11:10270600-10272000	Enhancers	Muscle Satellite Cultured Cells	--
25	chr11:10271200-10277800	Weak transcription	Osteobl	bone
26	chr11:10271400-10271800	Enhancers	HUES48 Cell Line	embryonic stem cell

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