Variant report

Variant	rs72863321
Chromosome Location	chr11:10245436-10245437
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10160400	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827277	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828592	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16907381	0.82[EUR][1000 genomes]
rs16907385	0.82[EUR][1000 genomes]
rs16907405	0.86[EUR][1000 genomes]
rs16907414	0.86[EUR][1000 genomes]
rs16907422	0.86[EUR][1000 genomes]
rs16907424	0.86[EUR][1000 genomes]
rs16907460	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16907505	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16907507	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16907525	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17293593	0.91[ASN][1000 genomes]
rs17294292	0.91[ASN][1000 genomes]
rs17294511	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17295800	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17295954	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17361849	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368443	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17368498	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2278629	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278631	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2920154	1.00[ASN][1000 genomes]
rs4515960	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55650476	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55650931	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55678570	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55771749	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55797397	0.86[EUR][1000 genomes]
rs55823443	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55865301	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55868496	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55925664	0.91[ASN][1000 genomes]
rs55955707	0.86[EUR][1000 genomes]
rs56244748	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56275118	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56287081	0.91[ASN][1000 genomes]
rs56409115	0.82[EUR][1000 genomes]
rs66593106	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67257108	0.83[ASN][1000 genomes]
rs7105045	0.91[ASN][1000 genomes]
rs72850415	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850420	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850423	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850426	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850434	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850453	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850480	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851606	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851620	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72858814	0.82[EUR][1000 genomes]
rs72858835	0.86[EUR][1000 genomes]
rs72858836	0.86[EUR][1000 genomes]
rs72858837	0.86[EUR][1000 genomes]
rs72858840	0.86[EUR][1000 genomes]
rs72858841	0.86[EUR][1000 genomes]
rs72858842	0.86[EUR][1000 genomes]
rs72858845	0.86[EUR][1000 genomes]
rs72858870	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72860505	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72860544	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72860557	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72860561	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72860566	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861704	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861713	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861720	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861722	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861724	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861731	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861743	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861747	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861754	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861755	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861758	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861773	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861780	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861781	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10230600-10246800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:10231000-10254400	Weak transcription	NHDF-Ad	bronchial
3	chr11:10231000-10254400	Weak transcription	NHLF	lung
4	chr11:10235400-10263400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:10240600-10259800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:10241000-10253600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:10241200-10252800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:10241200-10255200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:10241800-10254800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:10242400-10253600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:10242600-10252800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:10245200-10246600	Enhancers	Small Intestine	intestine

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