Variant report

Variant	rs72860557
Chromosome Location	chr11:10138052-10138053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10136561..10138179-chr11:10323345..10325457,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254554	Chromatin interaction

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs10160400	0.91[ASN][1000 genomes]
rs11826263	0.82[ASN][1000 genomes]
rs11827277	0.91[ASN][1000 genomes]
rs11828592	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12785752	0.82[ASN][1000 genomes]
rs16907355	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907372	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907375	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907381	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16907385	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907405	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907414	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907422	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907424	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907505	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16907507	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907525	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17272637	0.82[ASN][1000 genomes]
rs17272751	0.82[ASN][1000 genomes]
rs17293593	0.82[ASN][1000 genomes]
rs17294292	0.82[ASN][1000 genomes]
rs17294511	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17295800	0.91[ASN][1000 genomes]
rs17295954	0.91[ASN][1000 genomes]
rs17357710	0.82[ASN][1000 genomes]
rs17361849	0.91[ASN][1000 genomes]
rs17368443	0.91[ASN][1000 genomes]
rs17368498	0.91[ASN][1000 genomes]
rs2278629	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2278631	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2920154	0.91[ASN][1000 genomes]
rs4472930	0.82[EUR][1000 genomes]
rs4515960	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4601768	0.82[ASN][1000 genomes]
rs55650476	0.91[ASN][1000 genomes]
rs55650931	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55678570	0.91[ASN][1000 genomes]
rs55771749	0.91[ASN][1000 genomes]
rs55797397	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55823443	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55865301	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55905435	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55925664	0.82[ASN][1000 genomes]
rs55955707	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56173862	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56203621	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56223901	0.82[ASN][1000 genomes]
rs56244748	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56272536	0.84[EUR][1000 genomes]
rs56275118	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56287081	0.82[ASN][1000 genomes]
rs56374204	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56379921	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56409115	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66593106	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67257108	0.92[ASN][1000 genomes]
rs67446631	0.82[ASN][1000 genomes]
rs68010460	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7105045	0.82[ASN][1000 genomes]
rs72850415	0.91[ASN][1000 genomes]
rs72850420	0.91[ASN][1000 genomes]
rs72850423	0.91[ASN][1000 genomes]
rs72850426	0.91[ASN][1000 genomes]
rs72850434	0.91[ASN][1000 genomes]
rs72850453	0.91[ASN][1000 genomes]
rs72850480	0.91[ASN][1000 genomes]
rs72851606	0.91[ASN][1000 genomes]
rs72851620	0.91[ASN][1000 genomes]
rs72857111	0.82[ASN][1000 genomes]
rs72857124	0.82[ASN][1000 genomes]
rs72857130	0.82[ASN][1000 genomes]
rs72857132	0.82[ASN][1000 genomes]
rs72857147	0.91[ASN][1000 genomes]
rs72857149	0.82[ASN][1000 genomes]
rs72857152	0.82[ASN][1000 genomes]
rs72857155	0.82[ASN][1000 genomes]
rs72857188	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857189	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857190	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857192	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857193	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857194	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857196	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857201	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858804	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858806	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858808	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858814	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858828	0.82[ASN][1000 genomes]
rs72858835	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858836	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858837	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858840	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858841	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858842	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858845	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858870	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860505	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860561	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860566	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861704	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861713	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861720	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861722	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861724	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861731	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861743	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861747	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861754	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861755	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861758	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861773	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861780	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861781	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72863308	0.84[AFR][1000 genomes]
rs72863310	0.84[AFR][1000 genomes]
rs72863321	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10120400-10142800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:10122200-10144200	Weak transcription	Left Ventricle	heart
3	chr11:10122200-10156400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:10122400-10138600	Weak transcription	Esophagus	oesophagus
5	chr11:10122800-10141200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr11:10122800-10142600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:10123200-10156400	Weak transcription	Fetal Intestine Small	intestine
8	chr11:10126200-10143000	Weak transcription	Ovary	ovary
9	chr11:10131200-10144200	Weak transcription	Psoas Muscle	Psoas
10	chr11:10131400-10139200	Weak transcription	HUVEC	blood vessel
11	chr11:10131400-10142800	Weak transcription	Fetal Brain Male	brain
12	chr11:10131600-10139200	Weak transcription	HSMMtube	muscle
13	chr11:10131600-10139600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:10131800-10139000	Weak transcription	Fetal Lung	lung
15	chr11:10131800-10139000	Weak transcription	HSMM	muscle
16	chr11:10131800-10143600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:10132200-10143000	Weak transcription	Colon Smooth Muscle	Colon
18	chr11:10135400-10139600	Enhancers	NHDF-Ad	bronchial
19	chr11:10136600-10138400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:10136600-10139000	Weak transcription	Hela-S3	cervix
21	chr11:10136800-10139000	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr11:10136800-10143000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:10137000-10138200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:10137000-10138200	Weak transcription	Adipose Nuclei	Adipose
25	chr11:10137000-10139000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:10137200-10138200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:10137200-10138400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:10137200-10138600	Weak transcription	Osteobl	bone
29	chr11:10137200-10139200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:10137200-10139200	Weak transcription	NHLF	lung
31	chr11:10137200-10139600	Weak transcription	A549	lung
32	chr11:10137200-10161800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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