Variant report

Variant	rs56272536
Chromosome Location	chr11:10023157-10023158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs11826263	0.84[EUR][1000 genomes]
rs11828592	0.87[EUR][1000 genomes]
rs12785752	0.84[EUR][1000 genomes]
rs16907355	0.91[EUR][1000 genomes]
rs16907372	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs16907375	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs16907381	0.91[EUR][1000 genomes]
rs16907385	0.91[EUR][1000 genomes]
rs16907405	0.87[EUR][1000 genomes]
rs16907414	0.87[EUR][1000 genomes]
rs16907422	0.87[EUR][1000 genomes]
rs16907424	0.87[EUR][1000 genomes]
rs16907460	0.84[EUR][1000 genomes]
rs16907505	0.87[EUR][1000 genomes]
rs16907507	0.87[EUR][1000 genomes]
rs4472930	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4601768	0.88[EUR][1000 genomes]
rs55797397	0.87[EUR][1000 genomes]
rs55823443	0.82[EUR][1000 genomes]
rs55865301	0.84[EUR][1000 genomes]
rs55905435	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs55955707	0.87[EUR][1000 genomes]
rs56173862	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs56223901	0.88[EUR][1000 genomes]
rs56275118	0.87[EUR][1000 genomes]
rs56374204	0.91[EUR][1000 genomes]
rs56379921	0.88[EUR][1000 genomes]
rs56409115	0.84[EUR][1000 genomes]
rs67446631	0.83[EUR][1000 genomes]
rs68010460	0.93[EUR][1000 genomes]
rs72857147	0.88[EUR][1000 genomes]
rs72857149	0.88[EUR][1000 genomes]
rs72857152	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs72857155	0.88[EUR][1000 genomes]
rs72857188	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72857189	0.93[EUR][1000 genomes]
rs72857190	0.93[EUR][1000 genomes]
rs72857192	0.93[EUR][1000 genomes]
rs72857193	0.93[EUR][1000 genomes]
rs72857194	0.93[EUR][1000 genomes]
rs72857196	0.93[EUR][1000 genomes]
rs72857201	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72858804	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72858806	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72858808	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72858814	0.91[EUR][1000 genomes]
rs72858835	0.87[EUR][1000 genomes]
rs72858836	0.87[EUR][1000 genomes]
rs72858837	0.87[EUR][1000 genomes]
rs72858840	0.87[EUR][1000 genomes]
rs72858841	0.87[EUR][1000 genomes]
rs72858842	0.87[EUR][1000 genomes]
rs72858845	0.87[EUR][1000 genomes]
rs72858870	0.86[EUR][1000 genomes]
rs72860505	0.84[EUR][1000 genomes]
rs72860544	0.84[EUR][1000 genomes]
rs72860557	0.84[EUR][1000 genomes]
rs72860561	0.82[EUR][1000 genomes]
rs72860566	0.84[EUR][1000 genomes]
rs72861704	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv553475	chr11:10019879-10059623	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9981400-10051600	Weak transcription	Aorta	Aorta
2	chr11:9983600-10023200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr11:9985800-10023600	Weak transcription	Primary B cells from cord blood	blood
4	chr11:9985800-10049000	Weak transcription	Left Ventricle	heart
5	chr11:9990400-10028200	Weak transcription	Fetal Brain Female	brain
6	chr11:9991200-10060000	Weak transcription	Colon Smooth Muscle	Colon
7	chr11:9994800-10041800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr11:9996000-10024600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:9999800-10024000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr11:9999800-10024200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:10001400-10066200	Weak transcription	Pancreas	Pancrea
12	chr11:10004200-10048600	Weak transcription	Brain Angular Gyrus	brain
13	chr11:10004400-10024200	Weak transcription	NHLF	lung
14	chr11:10004600-10024000	Weak transcription	Brain Anterior Caudate	brain
15	chr11:10004600-10027600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr11:10004800-10023800	Weak transcription	HUVEC	blood vessel
17	chr11:10004800-10023800	Weak transcription	Osteobl	bone
18	chr11:10004800-10024800	Weak transcription	HSMM	muscle
19	chr11:10005000-10024000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr11:10005200-10024000	Weak transcription	Hela-S3	cervix
21	chr11:10005200-10026400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:10005200-10027600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr11:10005400-10024400	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr11:10005400-10026400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:10005400-10026400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:10005400-10027200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:10005400-10027400	Weak transcription	Fetal Stomach	stomach
28	chr11:10005400-10027600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr11:10005400-10029000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:10005600-10024000	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr11:10005600-10026400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr11:10005800-10024200	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr11:10006800-10026200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr11:10007200-10027200	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr11:10007600-10041800	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr11:10009400-10024200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr11:10010600-10026400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr11:10010600-10030000	Weak transcription	Primary T cells from cord blood	blood
39	chr11:10010600-10051200	Weak transcription	Ovary	ovary
40	chr11:10011200-10027200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr11:10011600-10024600	Weak transcription	HepG2	liver
42	chr11:10011600-10027200	Weak transcription	Fetal Muscle Leg	muscle
43	chr11:10011600-10028000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr11:10012000-10024800	Weak transcription	Fetal Intestine Large	intestine
45	chr11:10012000-10026200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr11:10012600-10049000	Weak transcription	Fetal Kidney	kidney
47	chr11:10013400-10026600	Weak transcription	A549	lung
48	chr11:10017600-10026400	Weak transcription	NHEK	skin
49	chr11:10017600-10027200	Weak transcription	Fetal Intestine Small	intestine
50	chr11:10018000-10031400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links