Variant report

Variant	rs72860505
Chromosome Location	chr11:10098406-10098407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9779389..9780344-chr11:10098256..10099114,2	K562	blood:
2	chr11:10012021..10012653-chr11:10098365..10099087,2	MCF-7	breast:
3	chr11:9779375..9780214-chr11:10098388..10099082,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000246273	Chromatin interaction
ENSG00000245522	Chromatin interaction

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10160400	0.91[ASN][1000 genomes]
rs11826263	0.82[ASN][1000 genomes]
rs11827277	0.91[ASN][1000 genomes]
rs11828592	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12785752	0.82[ASN][1000 genomes]
rs16907355	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907372	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907375	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907381	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16907385	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907405	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907414	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907422	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907424	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907460	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907505	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16907507	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907525	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17272637	0.82[ASN][1000 genomes]
rs17272751	0.82[ASN][1000 genomes]
rs17293593	0.82[ASN][1000 genomes]
rs17294292	0.82[ASN][1000 genomes]
rs17294511	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17295800	0.91[ASN][1000 genomes]
rs17295954	0.91[ASN][1000 genomes]
rs17357710	0.82[ASN][1000 genomes]
rs17361849	0.91[ASN][1000 genomes]
rs17368443	0.91[ASN][1000 genomes]
rs2278629	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2278631	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4472930	0.82[EUR][1000 genomes]
rs4515960	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4601768	0.82[ASN][1000 genomes]
rs55650476	0.91[ASN][1000 genomes]
rs55650931	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55678570	0.91[ASN][1000 genomes]
rs55797397	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55823443	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55865301	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55905435	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55925664	0.82[ASN][1000 genomes]
rs55955707	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56173862	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56203621	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56223901	0.82[ASN][1000 genomes]
rs56244748	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56272536	0.84[EUR][1000 genomes]
rs56275118	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56287081	0.82[ASN][1000 genomes]
rs56374204	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56379921	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56409115	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66593106	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67257108	0.92[ASN][1000 genomes]
rs67446631	0.82[ASN][1000 genomes]
rs68010460	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7105045	0.82[ASN][1000 genomes]
rs72850415	0.91[ASN][1000 genomes]
rs72850420	0.91[ASN][1000 genomes]
rs72850423	0.91[ASN][1000 genomes]
rs72850426	0.91[ASN][1000 genomes]
rs72850434	0.91[ASN][1000 genomes]
rs72850453	0.91[ASN][1000 genomes]
rs72850480	0.91[ASN][1000 genomes]
rs72857111	0.82[ASN][1000 genomes]
rs72857124	0.82[ASN][1000 genomes]
rs72857130	0.82[ASN][1000 genomes]
rs72857132	0.82[ASN][1000 genomes]
rs72857147	0.91[ASN][1000 genomes]
rs72857149	0.82[ASN][1000 genomes]
rs72857152	0.82[ASN][1000 genomes]
rs72857155	0.82[ASN][1000 genomes]
rs72857188	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857189	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857190	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857192	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857193	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857194	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857196	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857201	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858804	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858806	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858808	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858814	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858828	0.82[ASN][1000 genomes]
rs72858835	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858836	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858837	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858840	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858841	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858842	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858845	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858870	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860557	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860561	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861704	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861713	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861720	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861722	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861724	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861731	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861743	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861747	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861754	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861755	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861758	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861773	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861780	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861781	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72863321	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv553476	chr11:10024311-10117435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10072400-10101200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:10096800-10098600	Enhancers	Osteobl	bone
3	chr11:10096800-10100400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:10097400-10098600	Enhancers	NHDF-Ad	bronchial
5	chr11:10097600-10098600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:10097600-10098600	Enhancers	Brain Substantia Nigra	brain
7	chr11:10097600-10098600	ZNF genes & repeats	Fetal Intestine Small	intestine
8	chr11:10097600-10098600	Enhancers	Left Ventricle	heart
9	chr11:10097600-10098600	Enhancers	NHLF	lung
10	chr11:10097800-10098600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:10097800-10098600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:10097800-10098600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:10097800-10098600	Flanking Active TSS	Adipose Nuclei	Adipose
14	chr11:10097800-10098600	Enhancers	Fetal Muscle Trunk	muscle
15	chr11:10097800-10098600	Enhancers	Fetal Muscle Leg	muscle
16	chr11:10097800-10098600	Enhancers	Lung	lung
17	chr11:10097800-10098600	Enhancers	Psoas Muscle	Psoas
18	chr11:10097800-10098600	Enhancers	Rectal Smooth Muscle	rectum
19	chr11:10097800-10098600	Enhancers	Right Atrium	heart
20	chr11:10097800-10098800	Enhancers	Right Ventricle	heart
21	chr11:10098000-10098600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr11:10098000-10098600	Enhancers	H1 Cell Line	embryonic stem cell
23	chr11:10098000-10098600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:10098000-10098600	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr11:10098000-10098600	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr11:10098000-10098600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr11:10098000-10098600	Enhancers	Placenta	Placenta
28	chr11:10098200-10098600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr11:10098200-10098600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:10098200-10098600	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr11:10098200-10098600	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr11:10098200-10098600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr11:10098200-10098600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:10098200-10098600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:10098200-10098600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr11:10098200-10098600	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr11:10098200-10098600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:10098200-10098600	ZNF genes & repeats	Fetal Stomach	stomach
39	chr11:10098200-10098600	Enhancers	Gastric	stomach
40	chr11:10098200-10098600	Enhancers	Hela-S3	cervix
41	chr11:10098200-10102600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:10098400-10098600	Flanking Active TSS	Stomach Smooth Muscle	stomach

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