Variant report

Variant	rs56203621
Chromosome Location	chr11:10154887-10154888
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs11828592	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16907372	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16907375	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16907381	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16907385	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16907405	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16907414	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16907422	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16907424	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16907460	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16907505	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16907507	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16907525	0.86[AMR][1000 genomes]
rs17294511	0.86[AMR][1000 genomes]
rs2278629	0.86[AMR][1000 genomes]
rs2278631	0.86[AMR][1000 genomes]
rs4515960	0.86[AMR][1000 genomes]
rs55797397	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55823443	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55865301	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55905435	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55955707	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56173862	0.83[EUR][1000 genomes]
rs56244748	0.86[AMR][1000 genomes]
rs56275118	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56374204	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56379921	0.80[EUR][1000 genomes]
rs56409115	0.86[EUR][1000 genomes]
rs72857188	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72857189	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72857190	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72857192	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72857193	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72857194	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72857196	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72857201	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72858804	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72858806	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72858808	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72858814	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72858835	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72858836	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72858837	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72858840	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72858841	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72858842	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72858845	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72858870	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72860505	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72860544	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72860557	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72860561	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72860566	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72861704	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72861713	0.86[AMR][1000 genomes]
rs72861720	0.86[AMR][1000 genomes]
rs72861722	0.86[AMR][1000 genomes]
rs72861724	0.86[AMR][1000 genomes]
rs72861731	0.86[AMR][1000 genomes]
rs72861743	0.81[AMR][1000 genomes]
rs72861747	0.86[AMR][1000 genomes]
rs72861754	0.86[AMR][1000 genomes]
rs72861755	0.86[AMR][1000 genomes]
rs72861758	0.86[AMR][1000 genomes]
rs72861773	0.81[AMR][1000 genomes]
rs72861780	0.81[AMR][1000 genomes]
rs72861781	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10122200-10156400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:10123200-10156400	Weak transcription	Fetal Intestine Small	intestine
3	chr11:10137200-10161800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:10140000-10156200	Weak transcription	Fetal Lung	lung
5	chr11:10144200-10160800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:10144600-10156400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:10144800-10155200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:10144800-10161400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:10144800-10161400	Weak transcription	HSMM	muscle
10	chr11:10144800-10170400	Weak transcription	Left Ventricle	heart
11	chr11:10145400-10160800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:10145400-10160800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:10145800-10156400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:10147800-10160800	Weak transcription	NHEK	skin
15	chr11:10148000-10161000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr11:10148200-10160800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:10148400-10160800	Weak transcription	Adipose Nuclei	Adipose
18	chr11:10148400-10161400	Weak transcription	NHLF	lung
19	chr11:10148600-10160800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:10148800-10160800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:10149200-10162800	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr11:10151800-10156400	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr11:10152600-10155600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:10152600-10156200	Weak transcription	Right Ventricle	heart
25	chr11:10152800-10156600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:10152800-10161400	Weak transcription	Ovary	ovary
27	chr11:10153000-10156200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr11:10153800-10156200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:10154800-10155000	ZNF genes & repeats	Fetal Stomach	stomach
30	chr11:10154800-10155600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr11:10154800-10156000	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links