Variant report

Variant	rs16907507
Chromosome Location	chr11:10173050-10173051
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 121 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs10160400	0.91[ASN][1000 genomes]
rs11826263	0.82[ASN][1000 genomes]
rs11827277	0.91[ASN][1000 genomes]
rs11828592	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12785752	0.82[ASN][1000 genomes]
rs16907355	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907372	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907375	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907381	0.96[EUR][1000 genomes]
rs16907385	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907405	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907414	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907422	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907424	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907460	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907505	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16907525	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17272637	1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs17272751	1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs17293593	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs17294292	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs17294511	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17295800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17295954	1.00[CHB][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17357710	1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs17361849	0.91[ASN][1000 genomes]
rs17368443	0.91[ASN][1000 genomes]
rs17368498	0.91[ASN][1000 genomes]
rs2278629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2278631	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2920154	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs4472930	0.86[EUR][1000 genomes]
rs4515960	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4601768	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55650476	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55650931	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55678570	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55771749	0.91[ASN][1000 genomes]
rs55797397	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55823443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55865301	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55868496	0.82[EUR][1000 genomes]
rs55905435	0.95[EUR][1000 genomes]
rs55925664	0.82[ASN][1000 genomes]
rs55955707	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56173862	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56203621	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56223901	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56244748	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56272536	0.87[EUR][1000 genomes]
rs56275118	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56287081	0.82[ASN][1000 genomes]
rs56374204	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56379921	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56409115	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66593106	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67257108	0.92[ASN][1000 genomes]
rs67446631	0.82[ASN][1000 genomes]
rs68010460	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7105045	0.82[ASN][1000 genomes]
rs72850415	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs72850420	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72850423	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72850426	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72850434	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72850453	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72850480	0.91[ASN][1000 genomes]
rs72851606	0.91[ASN][1000 genomes]
rs72851620	0.91[ASN][1000 genomes]
rs72857111	0.82[ASN][1000 genomes]
rs72857124	0.82[ASN][1000 genomes]
rs72857130	0.82[ASN][1000 genomes]
rs72857132	0.82[ASN][1000 genomes]
rs72857147	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72857149	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857152	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857155	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857188	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857189	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857190	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857192	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857193	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857194	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857196	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857201	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858804	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858806	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858808	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858814	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858828	0.82[ASN][1000 genomes]
rs72858835	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858836	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858837	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858840	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858841	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858842	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858845	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858870	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860505	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860544	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860557	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860561	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860566	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861704	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861713	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861720	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861722	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861724	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861731	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861743	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861747	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861754	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861755	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861758	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861773	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861780	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861781	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72863321	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10157000-10177400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:10162400-10177400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:10162400-10177800	Weak transcription	NHLF	lung
4	chr11:10166800-10177600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:10170600-10189000	Weak transcription	Left Ventricle	heart
6	chr11:10172400-10173200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:10173000-10177400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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