Variant report

Variant	rs12785752
Chromosome Location	chr11:10011569-10011570
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10011394..10012992-chr11:10327878..10330326,2	MCF-7	breast:
2	chr11:10010659..10013525-chr11:10017615..10019134,2	K562	blood:
3	chr11:10002720..10004321-chr11:10011527..10014066,2	K562	blood:
4	chr11:10004750..10006557-chr11:10010668..10012877,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133805	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10840337	1.00[YRI][hapmap]
rs11823001	1.00[YRI][hapmap]
rs11824802	1.00[YRI][hapmap]
rs11825045	1.00[YRI][hapmap]
rs11826263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828592	0.82[ASN][1000 genomes]
rs12362147	1.00[YRI][hapmap]
rs16907298	1.00[YRI][hapmap]
rs16907355	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907372	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907375	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907381	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16907385	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907405	1.00[ASN][1000 genomes]
rs16907414	1.00[ASN][1000 genomes]
rs16907422	1.00[ASN][1000 genomes]
rs16907424	1.00[ASN][1000 genomes]
rs16907460	0.82[ASN][1000 genomes]
rs16907507	0.82[ASN][1000 genomes]
rs17272637	1.00[ASN][1000 genomes]
rs17272751	1.00[ASN][1000 genomes]
rs17357710	1.00[ASN][1000 genomes]
rs4472930	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4601768	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55797397	1.00[ASN][1000 genomes]
rs55823443	0.82[ASN][1000 genomes]
rs55865301	0.82[ASN][1000 genomes]
rs55905435	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55955707	1.00[ASN][1000 genomes]
rs56173862	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56223901	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56272536	0.84[EUR][1000 genomes]
rs56275118	0.82[ASN][1000 genomes]
rs56374204	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56379921	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56409115	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs66803065	0.92[ASN][1000 genomes]
rs67446631	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68010460	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72857111	1.00[ASN][1000 genomes]
rs72857124	1.00[ASN][1000 genomes]
rs72857130	1.00[ASN][1000 genomes]
rs72857132	1.00[ASN][1000 genomes]
rs72857147	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72857149	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72857152	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72857155	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72857188	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72857189	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72857190	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72857192	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72857193	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72857194	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72857196	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72857201	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72858804	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72858806	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72858808	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72858814	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72858828	1.00[ASN][1000 genomes]
rs72858835	1.00[ASN][1000 genomes]
rs72858836	1.00[ASN][1000 genomes]
rs72858837	1.00[ASN][1000 genomes]
rs72858840	1.00[ASN][1000 genomes]
rs72858841	1.00[ASN][1000 genomes]
rs72858842	1.00[ASN][1000 genomes]
rs72858845	1.00[ASN][1000 genomes]
rs72858870	0.82[ASN][1000 genomes]
rs72860505	0.82[ASN][1000 genomes]
rs72860544	0.82[ASN][1000 genomes]
rs72860557	0.82[ASN][1000 genomes]
rs72860561	0.82[ASN][1000 genomes]
rs72860566	0.82[ASN][1000 genomes]
rs72861704	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896988	chr11:9912052-10012511	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	esv1819684	chr11:9973062-10012511	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9981000-10020000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr11:9981400-10014800	Weak transcription	Dnd41	blood
3	chr11:9981400-10017000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr11:9981400-10051600	Weak transcription	Aorta	Aorta
5	chr11:9983600-10023200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr11:9985800-10021600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr11:9985800-10023600	Weak transcription	Primary B cells from cord blood	blood
8	chr11:9985800-10049000	Weak transcription	Left Ventricle	heart
9	chr11:9990000-10012600	Weak transcription	Liver	Liver
10	chr11:9990000-10018200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr11:9990400-10028200	Weak transcription	Fetal Brain Female	brain
12	chr11:9991200-10060000	Weak transcription	Colon Smooth Muscle	Colon
13	chr11:9994800-10041800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr11:9996000-10024600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr11:9999600-10019800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr11:9999800-10024000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr11:9999800-10024200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr11:10001400-10066200	Weak transcription	Pancreas	Pancrea
19	chr11:10002800-10016000	Weak transcription	Colonic Mucosa	Colon
20	chr11:10003800-10014800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr11:10004000-10020000	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr11:10004200-10048600	Weak transcription	Brain Angular Gyrus	brain
23	chr11:10004400-10020200	Weak transcription	Brain Hippocampus Middle	brain
24	chr11:10004400-10021600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr11:10004400-10024200	Weak transcription	NHLF	lung
26	chr11:10004600-10021800	Weak transcription	Esophagus	oesophagus
27	chr11:10004600-10024000	Weak transcription	Brain Anterior Caudate	brain
28	chr11:10004600-10027600	Weak transcription	Fetal Muscle Trunk	muscle
29	chr11:10004800-10021800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr11:10004800-10023000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr11:10004800-10023800	Weak transcription	HUVEC	blood vessel
32	chr11:10004800-10023800	Weak transcription	Osteobl	bone
33	chr11:10004800-10024800	Weak transcription	HSMM	muscle
34	chr11:10005000-10024000	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr11:10005200-10012000	Weak transcription	Brain Substantia Nigra	brain
36	chr11:10005200-10012000	Weak transcription	Lung	lung
37	chr11:10005200-10017600	Weak transcription	HMEC	breast
38	chr11:10005200-10021400	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr11:10005200-10021400	Weak transcription	Placenta	Placenta
40	chr11:10005200-10024000	Weak transcription	Hela-S3	cervix
41	chr11:10005200-10026400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr11:10005200-10027600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr11:10005400-10011600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr11:10005400-10013200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr11:10005400-10017200	Weak transcription	Fetal Intestine Small	intestine
46	chr11:10005400-10022800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr11:10005400-10024400	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr11:10005400-10026400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr11:10005400-10026400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr11:10005400-10027200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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