Variant report

Variant	rs55865301
Chromosome Location	chr11:10130646-10130647
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10129087..10131222-chr11:10133484..10136579,3	MCF-7	breast:

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs10160400	0.91[ASN][1000 genomes]
rs11826263	0.82[ASN][1000 genomes]
rs11827277	0.91[ASN][1000 genomes]
rs11828592	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12785752	0.82[ASN][1000 genomes]
rs16907355	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907372	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907375	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907381	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16907385	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907405	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907414	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907422	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907424	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907460	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907505	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16907507	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907525	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17272637	0.82[ASN][1000 genomes]
rs17272751	0.82[ASN][1000 genomes]
rs17293593	0.82[ASN][1000 genomes]
rs17294292	0.82[ASN][1000 genomes]
rs17294511	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17295800	0.91[ASN][1000 genomes]
rs17295954	0.91[ASN][1000 genomes]
rs17357710	0.82[ASN][1000 genomes]
rs17361849	0.91[ASN][1000 genomes]
rs17368443	0.91[ASN][1000 genomes]
rs17368498	0.91[ASN][1000 genomes]
rs2278629	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2278631	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2920154	0.91[ASN][1000 genomes]
rs4472930	0.82[EUR][1000 genomes]
rs4515960	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4601768	0.82[ASN][1000 genomes]
rs55650476	0.91[ASN][1000 genomes]
rs55650931	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55678570	0.91[ASN][1000 genomes]
rs55771749	0.91[ASN][1000 genomes]
rs55797397	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55823443	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55905435	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55925664	0.82[ASN][1000 genomes]
rs55955707	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56173862	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56203621	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56223901	0.82[ASN][1000 genomes]
rs56244748	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56272536	0.84[EUR][1000 genomes]
rs56275118	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56287081	0.82[ASN][1000 genomes]
rs56374204	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56379921	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56409115	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66593106	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67257108	0.92[ASN][1000 genomes]
rs67446631	0.82[ASN][1000 genomes]
rs68010460	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7105045	0.82[ASN][1000 genomes]
rs72850415	0.91[ASN][1000 genomes]
rs72850420	0.91[ASN][1000 genomes]
rs72850423	0.91[ASN][1000 genomes]
rs72850426	0.91[ASN][1000 genomes]
rs72850434	0.91[ASN][1000 genomes]
rs72850453	0.91[ASN][1000 genomes]
rs72850480	0.91[ASN][1000 genomes]
rs72851606	0.91[ASN][1000 genomes]
rs72851620	0.91[ASN][1000 genomes]
rs72857111	0.82[ASN][1000 genomes]
rs72857124	0.82[ASN][1000 genomes]
rs72857130	0.82[ASN][1000 genomes]
rs72857132	0.82[ASN][1000 genomes]
rs72857147	0.91[ASN][1000 genomes]
rs72857149	0.82[ASN][1000 genomes]
rs72857152	0.82[ASN][1000 genomes]
rs72857155	0.82[ASN][1000 genomes]
rs72857188	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857189	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857190	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857192	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857193	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857194	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857196	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72857201	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858804	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858806	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858808	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858814	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858828	0.82[ASN][1000 genomes]
rs72858835	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858836	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858837	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858840	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858841	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858842	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858845	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72858870	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860505	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860544	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860557	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860561	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861704	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861713	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861720	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861722	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861724	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861731	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861743	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861747	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861754	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861755	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861758	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861773	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861780	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72861781	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72863321	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10116800-10131000	Weak transcription	Gastric	stomach
2	chr11:10117200-10131000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:10120400-10142800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:10120800-10131000	Weak transcription	A549	lung
5	chr11:10121400-10131200	Weak transcription	Liver	Liver
6	chr11:10122200-10130800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr11:10122200-10131000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr11:10122200-10144200	Weak transcription	Left Ventricle	heart
9	chr11:10122200-10156400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:10122400-10130800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:10122400-10130800	Weak transcription	Fetal Lung	lung
12	chr11:10122400-10130800	Weak transcription	HSMM	muscle
13	chr11:10122400-10131200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:10122400-10138600	Weak transcription	Esophagus	oesophagus
15	chr11:10122600-10130800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr11:10122800-10131000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:10122800-10132800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:10122800-10141200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr11:10122800-10142600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:10123200-10156400	Weak transcription	Fetal Intestine Small	intestine
21	chr11:10126200-10131000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr11:10126200-10143000	Weak transcription	Ovary	ovary
23	chr11:10128000-10131000	Enhancers	NHDF-Ad	bronchial
24	chr11:10128400-10131000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr11:10128800-10132200	Enhancers	Colon Smooth Muscle	Colon
26	chr11:10128800-10132200	Enhancers	Fetal Heart	heart
27	chr11:10129000-10131400	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr11:10129000-10131800	Enhancers	Adipose Nuclei	Adipose
29	chr11:10129000-10131800	Enhancers	Rectal Smooth Muscle	rectum
30	chr11:10129000-10132400	Enhancers	Osteobl	bone
31	chr11:10129200-10131000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:10129200-10131000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr11:10129400-10131000	Weak transcription	Aorta	Aorta
34	chr11:10129800-10131000	Enhancers	HSMMtube	muscle
35	chr11:10130000-10131000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr11:10130200-10131200	Enhancers	Fetal Muscle Leg	muscle
37	chr11:10130400-10131200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr11:10130400-10131400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr11:10130400-10131400	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr11:10130400-10131800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr11:10130400-10132000	Enhancers	Muscle Satellite Cultured Cells	--
42	chr11:10130400-10132200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:10130400-10133000	Enhancers	NHLF	lung
44	chr11:10130600-10131000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:10130600-10131000	Weak transcription	Psoas Muscle	Psoas
46	chr11:10130600-10131400	Enhancers	Stomach Smooth Muscle	stomach
47	chr11:10130600-10131800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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