Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs16907460	0.84[AFR][1000 genomes]
rs17295800	0.82[AFR][1000 genomes]
rs17295954	0.82[AFR][1000 genomes]
rs17361849	0.82[AFR][1000 genomes]
rs17368443	0.82[AFR][1000 genomes]
rs2278629	0.91[AFR][1000 genomes]
rs55650476	0.82[AFR][1000 genomes]
rs55678570	0.91[AFR][1000 genomes]
rs55868496	0.82[AFR][1000 genomes]
rs56244748	0.91[AFR][1000 genomes]
rs72850415	0.91[AFR][1000 genomes]
rs72850420	0.91[AFR][1000 genomes]
rs72850423	0.91[AFR][1000 genomes]
rs72850426	0.91[AFR][1000 genomes]
rs72850434	0.91[AFR][1000 genomes]
rs72850453	0.82[AFR][1000 genomes]
rs72850480	0.82[AFR][1000 genomes]
rs72851606	0.82[AFR][1000 genomes]
rs72851630	0.81[AMR][1000 genomes]
rs72860557	0.84[AFR][1000 genomes]
rs72861713	0.91[AFR][1000 genomes]
rs72861720	0.91[AFR][1000 genomes]
rs72861722	0.91[AFR][1000 genomes]
rs72861724	0.91[AFR][1000 genomes]
rs72861731	0.91[AFR][1000 genomes]
rs72861743	0.91[AFR][1000 genomes]
rs72861754	0.91[AFR][1000 genomes]
rs72861758	0.91[AFR][1000 genomes]
rs72861773	0.91[AFR][1000 genomes]
rs72861780	0.91[AFR][1000 genomes]
rs72861781	0.91[AFR][1000 genomes]
rs72863310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10219000-10242200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:10227800-10242600	Weak transcription	Esophagus	oesophagus
3	chr11:10230600-10246800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:10231000-10254400	Weak transcription	NHDF-Ad	bronchial
5	chr11:10231000-10254400	Weak transcription	NHLF	lung
6	chr11:10235400-10263400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:10237800-10243400	Weak transcription	HepG2	liver
8	chr11:10240000-10242400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:10240200-10241800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:10240400-10242800	Weak transcription	Right Atrium	heart
11	chr11:10240600-10241600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:10240600-10259800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr11:10241000-10242200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:10241000-10253600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:10241200-10242000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr11:10241200-10252800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:10241200-10255200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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