Variant report

Variant	rs56262739
Chromosome Location	chr11:10370109-10370110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11822548	0.87[ASN][1000 genomes]
rs11824642	0.87[ASN][1000 genomes]
rs1806908	0.87[ASN][1000 genomes]
rs2015150	0.87[ASN][1000 genomes]
rs56726683	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57189777	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59235070	0.87[ASN][1000 genomes]
rs60502169	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60743731	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72851647	0.87[ASN][1000 genomes]
rs72851665	0.87[ASN][1000 genomes]
rs72851667	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs72851668	0.87[ASN][1000 genomes]
rs72851686	0.87[ASN][1000 genomes]
rs72851689	0.87[ASN][1000 genomes]
rs72852806	0.87[ASN][1000 genomes]
rs72852812	0.87[ASN][1000 genomes]
rs72852835	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72852843	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10348200-10370200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:10367400-10372000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:10368200-10370200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:10368800-10373000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:10369600-10374200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:10369800-10371400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:10369800-10373000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:10369800-10373000	Enhancers	Adipose Nuclei	Adipose
9	chr11:10369800-10374000	Enhancers	HSMM	muscle
10	chr11:10369800-10374000	Enhancers	NHDF-Ad	bronchial
11	chr11:10369800-10374200	Enhancers	NHLF	lung
12	chr11:10369800-10378000	Enhancers	Placenta	Placenta
13	chr11:10370000-10372800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:10370000-10373000	Enhancers	HepG2	liver
15	chr11:10370000-10374200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr11:10370000-10374200	Enhancers	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links