Variant report

Variant	rs17271623
Chromosome Location	chr11:9980760-9980761
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs11608212	1.00[ASN][1000 genomes]
rs12098983	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274440	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17271223	1.00[ASN][1000 genomes]
rs17272133	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17292774	1.00[ASN][1000 genomes]
rs17355751	1.00[ASN][1000 genomes]
rs17356069	1.00[ASN][1000 genomes]
rs17356237	1.00[ASN][1000 genomes]
rs17356369	1.00[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17358721	1.00[ASN][1000 genomes]
rs17358882	1.00[ASN][1000 genomes]
rs4910071	1.00[ASN][1000 genomes]
rs55811615	1.00[ASN][1000 genomes]
rs56067762	1.00[ASN][1000 genomes]
rs61876910	1.00[ASN][1000 genomes]
rs61876915	1.00[ASN][1000 genomes]
rs61876922	1.00[ASN][1000 genomes]
rs61876923	1.00[ASN][1000 genomes]
rs61876926	1.00[ASN][1000 genomes]
rs61876927	1.00[ASN][1000 genomes]
rs61876942	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876945	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876948	0.91[EUR][1000 genomes]
rs61876949	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876951	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876972	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876973	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876974	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876975	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876976	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876977	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876978	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876980	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876982	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876983	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876984	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877004	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877005	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877038	0.81[EUR][1000 genomes]
rs61877039	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877042	1.00[ASN][1000 genomes]
rs61877044	1.00[ASN][1000 genomes]
rs61877046	1.00[ASN][1000 genomes]
rs61877050	1.00[ASN][1000 genomes]
rs61877054	1.00[ASN][1000 genomes]
rs61877264	1.00[ASN][1000 genomes]
rs61878586	1.00[ASN][1000 genomes]
rs61878654	1.00[ASN][1000 genomes]
rs61878655	1.00[ASN][1000 genomes]
rs61878657	1.00[ASN][1000 genomes]
rs61878658	1.00[ASN][1000 genomes]
rs61878659	1.00[ASN][1000 genomes]
rs61880160	1.00[ASN][1000 genomes]
rs6483792	1.00[ASN][1000 genomes]
rs6483859	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66536570	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66553354	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7105355	1.00[ASN][1000 genomes]
rs7108187	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109648	0.86[CEU][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7110027	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117364	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118211	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118427	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120043	1.00[ASN][1000 genomes]
rs7120403	0.87[CEU][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122370	1.00[ASN][1000 genomes]
rs7123546	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129274	1.00[ASN][1000 genomes]
rs7130478	1.00[ASN][1000 genomes]
rs7131546	1.00[ASN][1000 genomes]
rs72854502	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72855652	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72855680	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72857108	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72858820	1.00[ASN][1000 genomes]
rs72858863	1.00[ASN][1000 genomes]
rs72858902	1.00[ASN][1000 genomes]
rs7342224	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928664	1.00[ASN][1000 genomes]
rs7935235	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935610	1.00[ASN][1000 genomes]
rs7936602	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938570	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938773	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939096	1.00[ASN][1000 genomes]
rs7939269	1.00[ASN][1000 genomes]
rs7942807	1.00[ASN][1000 genomes]
rs7945309	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949110	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949493	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952455	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9666488	0.88[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896988	chr11:9912052-10012511	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	esv1819684	chr11:9973062-10012511	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv982983	chr11:9980342-9981342	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9952800-9995200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:9965200-9981000	Weak transcription	HUVEC	blood vessel
3	chr11:9968000-9984000	Weak transcription	Primary B cells from cord blood	blood
4	chr11:9968000-9984200	Weak transcription	Fetal Kidney	kidney
5	chr11:9973000-9986000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr11:9973800-10010600	Weak transcription	Fetal Brain Male	brain
7	chr11:9974200-9980800	Weak transcription	Brain Germinal Matrix	brain
8	chr11:9974200-9994400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:9974200-9994600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:9974200-9994800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr11:9974200-9999000	Weak transcription	Fetal Heart	heart
12	chr11:9974200-9999000	Weak transcription	HSMMtube	muscle
13	chr11:9974400-9982800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:9975400-9985600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:9975600-9981000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr11:9977000-9994400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr11:9977600-9982000	Weak transcription	Stomach Mucosa	stomach
18	chr11:9977800-9981600	Strong transcription	Fetal Lung	lung
19	chr11:9978200-9981600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr11:9978600-9981800	Strong transcription	Left Ventricle	heart
21	chr11:9978600-9986000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:9978800-9985000	Weak transcription	Small Intestine	intestine
23	chr11:9979400-9981600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:9979400-9982000	Weak transcription	Colonic Mucosa	Colon
25	chr11:9979400-9986000	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr11:9979400-9995000	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr11:9979600-9981600	Strong transcription	Fetal Muscle Leg	muscle
28	chr11:9979600-9981800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr11:9979600-9982000	Strong transcription	Fetal Stomach	stomach
30	chr11:9979600-9985600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:9979600-9985800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:9979600-9994600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr11:9979800-9981200	Weak transcription	Lung	lung
34	chr11:9979800-9987400	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr11:9979800-9999200	Weak transcription	NH-A	brain
36	chr11:9980000-9981600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:9980000-9982200	Weak transcription	Thymus	Thymus
38	chr11:9980200-9980800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:9980200-9980800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr11:9980200-9981000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr11:9980200-9981000	Strong transcription	Sigmoid Colon	Sigmoid Colon
42	chr11:9980200-9981200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr11:9980200-9981200	Strong transcription	NHDF-Ad	bronchial
44	chr11:9980200-9981200	Strong transcription	Osteobl	bone
45	chr11:9980200-9981400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr11:9980200-9981400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr11:9980200-9981400	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr11:9980200-9981400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
49	chr11:9980200-9981400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr11:9980200-9981400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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