Variant report

Variant	rs7925720
Chromosome Location	chr11:10358540-10358541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1450271	0.82[AFR][1000 genomes]
rs1562782	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2015148	0.80[AFR][1000 genomes]
rs2923089	0.82[AFR][1000 genomes]
rs2923096	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2923097	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2923099	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2957692	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2957694	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7926490	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10348200-10370200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:10357800-10361000	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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