Variant report
| Variant | rs2084864 |
|---|---|
| Chromosome Location | chr8:64502171-64502172 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:64498488..64501291-chr8:64501726..64504629,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000253583 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs13249618 | 0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1452487 | 0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1452492 | 0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2084863 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2354861 | 0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs72649207 | 0.86[ASN][1000 genomes] |
| rs72649209 | 0.86[ASN][1000 genomes] |
| rs72649210 | 0.84[ASN][1000 genomes] |
| rs896619 | 0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831343 | chr8:64436268-64642328 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
