Variant report
| Variant | rs1452492 |
|---|---|
| Chromosome Location | chr8:64521917-64521918 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-TTPA-10 | chr8:64521912-64522158 | NONHSAT126945 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs10091265 | 0.88[ASN][1000 genomes] |
| rs11989556 | 0.87[ASN][1000 genomes] |
| rs12334387 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs13249618 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1452487 | 0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1562987 | 0.87[ASN][1000 genomes] |
| rs2060859 | 0.87[ASN][1000 genomes] |
| rs2084863 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2084864 | 0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs812603 | 0.81[ASN][1000 genomes] |
| rs896619 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831343 | chr8:64436268-64642328 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
