Variant report

Variant	rs11989556
Chromosome Location	chr8:64518613-64518614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10957292	0.87[ASN][1000 genomes]
rs11779429	0.84[ASN][1000 genomes]
rs12334387	0.80[ASN][1000 genomes]
rs1452487	0.83[ASN][1000 genomes]
rs1452492	0.87[ASN][1000 genomes]
rs1562987	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16930598	0.87[ASN][1000 genomes]
rs3862073	0.87[ASN][1000 genomes]
rs59770997	0.90[AFR][1000 genomes]
rs72649207	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72649209	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72649210	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831343	chr8:64436268-64642328	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64515600-64519800	Enhancers	Fetal Brain Male	brain
2	chr8:64517800-64518800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:64518000-64519400	Flanking Active TSS	Fetal Brain Female	brain
4	chr8:64518400-64518800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr8:64518400-64518800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr8:64518400-64519000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:64518400-64519000	Flanking Active TSS	Brain Germinal Matrix	brain
8	chr8:64518400-64519800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:64518600-64519400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr8:64518600-64520600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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