Variant report

Variant	rs11779429
Chromosome Location	chr8:64619594-64619595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10957292	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11989556	0.84[ASN][1000 genomes]
rs1217097	0.86[ASN][1000 genomes]
rs12678656	0.82[EUR][1000 genomes]
rs12682101	1.00[YRI][hapmap]
rs1562987	0.84[ASN][1000 genomes]
rs16930598	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16930623	0.96[EUR][1000 genomes]
rs17288060	0.82[EUR][1000 genomes]
rs3862073	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73686537	0.96[EUR][1000 genomes]
rs7465464	1.00[YRI][hapmap]
rs790561	0.82[ASN][1000 genomes]
rs790564	0.85[ASN][1000 genomes]
rs812603	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831343	chr8:64436268-64642328	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64616200-64619600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:64616200-64621400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:64617000-64628000	Weak transcription	Colon Smooth Muscle	Colon
4	chr8:64617600-64619800	Weak transcription	Brain Germinal Matrix	brain
5	chr8:64619400-64619800	Enhancers	Fetal Brain Male	brain
6	chr8:64619400-64619800	Enhancers	Fetal Brain Female	brain
7	chr8:64619400-64619800	Enhancers	Rectal Smooth Muscle	rectum
8	chr8:64619400-64621400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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