Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10091265	0.83[ASN][1000 genomes]
rs10091567	0.82[EUR][1000 genomes]
rs10109147	0.82[EUR][1000 genomes]
rs10957292	0.82[ASN][1000 genomes]
rs10957296	0.81[EUR][1000 genomes]
rs10957297	0.95[CEU][hapmap];0.90[TSI][hapmap]
rs11779429	0.82[ASN][1000 genomes]
rs1217096	0.86[EUR][1000 genomes]
rs1217097	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1217105	0.96[EUR][1000 genomes]
rs1402380	0.84[EUR][1000 genomes]
rs1520919	0.84[EUR][1000 genomes]
rs1590109	0.82[EUR][1000 genomes]
rs16930598	0.82[ASN][1000 genomes]
rs2060859	0.83[ASN][1000 genomes]
rs2204012	0.82[EUR][1000 genomes]
rs3862073	0.82[ASN][1000 genomes]
rs58926565	0.82[EUR][1000 genomes]
rs6472121	0.84[EUR][1000 genomes]
rs6472123	0.84[EUR][1000 genomes]
rs7824991	0.95[CEU][hapmap]
rs7834671	0.84[EUR][1000 genomes]
rs790564	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs790567	0.85[EUR][1000 genomes]
rs806255	0.85[EUR][1000 genomes]
rs812603	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9694306	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831343	chr8:64436268-64642328	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64616200-64619600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:64616200-64621400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:64616400-64619400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr8:64617000-64618400	Enhancers	Fetal Brain Male	brain
5	chr8:64617000-64628000	Weak transcription	Colon Smooth Muscle	Colon
6	chr8:64617200-64619400	Weak transcription	Fetal Brain Female	brain
7	chr8:64617600-64619800	Weak transcription	Brain Germinal Matrix	brain
8	chr8:64617800-64618200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr8:64617800-64618400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:64618000-64618200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr8:64618000-64618400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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