Variant report

Variant	rs6472123
Chromosome Location	chr8:64692729-64692730
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:64692440..64694258-chr8:64697965..64699703,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-32K4.2.1-1	chr8:64691006-64693479	ENSG00000253734
2	lnc-RP11-32K4.2.1-1	chr8:64691006-64693479	NR_038875

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10091567	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10106342	0.80[EUR][1000 genomes]
rs10109147	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10957296	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10957297	0.93[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.86[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap]
rs1217097	0.84[EUR][1000 genomes]
rs1217105	0.87[EUR][1000 genomes]
rs1402380	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1520919	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1590109	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1996708	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2204012	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28542151	0.80[EUR][1000 genomes]
rs28549862	0.80[EUR][1000 genomes]
rs28721440	0.80[EUR][1000 genomes]
rs6472119	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6472121	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66707855	0.80[EUR][1000 genomes]
rs6980548	0.80[EUR][1000 genomes]
rs7824991	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs7834671	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs790561	0.84[EUR][1000 genomes]
rs790564	0.80[EUR][1000 genomes]
rs9694306	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831344	chr8:64658229-64712338	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64691200-64700800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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