Variant report
| Variant | rs7834671 |
|---|---|
| Chromosome Location | chr8:64691770-64691771 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-RP11-32K4.2.1-1 | chr8:64691006-64693479 | ENSG00000253734 |
| 2 | lnc-RP11-32K4.2.1-1 | chr8:64691006-64693479 | NR_038875 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10091567 | 0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10106342 | 0.80[EUR][1000 genomes] |
| rs10109147 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10957296 | 0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10957297 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1217097 | 0.84[EUR][1000 genomes] |
| rs1217105 | 0.87[EUR][1000 genomes] |
| rs1402380 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1520919 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1590109 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1996708 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2204012 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs28542151 | 0.80[EUR][1000 genomes] |
| rs28549862 | 0.80[EUR][1000 genomes] |
| rs28721440 | 0.80[EUR][1000 genomes] |
| rs6472119 | 0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6472121 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6472123 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs66707855 | 0.80[EUR][1000 genomes] |
| rs6980548 | 0.80[EUR][1000 genomes] |
| rs7824991 | 0.95[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs790561 | 0.84[EUR][1000 genomes] |
| rs790564 | 0.80[EUR][1000 genomes] |
| rs9694306 | 0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831344 | chr8:64658229-64712338 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:64691200-64700800 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
