Variant report

Variant	rs6472119
Chromosome Location	chr8:64660996-64660997
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10091567	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10109147	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10957296	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10957297	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1217105	0.81[EUR][1000 genomes]
rs1402380	0.81[EUR][1000 genomes]
rs1520919	0.81[EUR][1000 genomes]
rs1590109	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1996708	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2204012	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6472121	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6472123	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7824991	0.91[CEU][hapmap]
rs7834671	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9694306	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831344	chr8:64658229-64712338	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64654400-64663400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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