Variant report

Variant	rs6980548
Chromosome Location	chr8:64682296-64682297
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-32K4.2.1-1	chr8:64681988-64682403	ENSG00000253734
2	lnc-RP11-32K4.2.1-1	chr8:64681988-64682403	NR_038875

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10090357	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10090496	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10091697	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10106342	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10957297	0.91[CEU][hapmap]
rs1149470	0.80[EUR][1000 genomes]
rs1149471	0.82[EUR][1000 genomes]
rs1149472	0.81[EUR][1000 genomes]
rs1149473	0.81[EUR][1000 genomes]
rs1149474	0.82[EUR][1000 genomes]
rs1149475	0.81[EUR][1000 genomes]
rs1217098	0.87[EUR][1000 genomes]
rs1217099	0.87[EUR][1000 genomes]
rs1217101	0.83[EUR][1000 genomes]
rs1217103	0.91[EUR][1000 genomes]
rs1217110	0.81[EUR][1000 genomes]
rs1402380	0.80[EUR][1000 genomes]
rs1520919	0.80[EUR][1000 genomes]
rs16930633	0.87[EUR][1000 genomes]
rs16930637	0.87[EUR][1000 genomes]
rs17215671	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28439112	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28542151	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28549862	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28721440	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57093124	0.85[EUR][1000 genomes]
rs58926565	0.82[EUR][1000 genomes]
rs6472121	0.80[EUR][1000 genomes]
rs6472123	0.80[EUR][1000 genomes]
rs66503419	0.91[EUR][1000 genomes]
rs66513944	0.87[EUR][1000 genomes]
rs66707855	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67344323	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67801322	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6992714	0.91[EUR][1000 genomes]
rs72649240	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7813066	0.83[EUR][1000 genomes]
rs7824991	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7834364	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7834671	0.80[EUR][1000 genomes]
rs790563	0.82[EUR][1000 genomes]
rs790565	0.87[EUR][1000 genomes]
rs790566	0.86[EUR][1000 genomes]
rs978336	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831344	chr8:64658229-64712338	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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