Variant report

Variant	rs790565
Chromosome Location	chr8:64619307-64619308
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10090357	0.88[EUR][1000 genomes]
rs10090496	0.86[EUR][1000 genomes]
rs10091697	0.86[EUR][1000 genomes]
rs10106342	0.87[EUR][1000 genomes]
rs10957297	0.90[CEU][hapmap]
rs1149456	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1149457	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1149470	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1149471	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1149472	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1149473	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1149474	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1149475	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217096	0.90[EUR][1000 genomes]
rs1217098	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217099	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217101	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217103	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217104	0.84[EUR][1000 genomes]
rs1217106	0.84[EUR][1000 genomes]
rs1217107	0.91[EUR][1000 genomes]
rs1217108	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1217109	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1217110	0.93[EUR][1000 genomes]
rs1238050	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1310173	0.83[EUR][1000 genomes]
rs16930633	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16930637	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17215671	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28439112	0.88[EUR][1000 genomes]
rs28542151	0.90[EUR][1000 genomes]
rs28549862	0.90[EUR][1000 genomes]
rs28721440	0.90[EUR][1000 genomes]
rs57093124	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58926565	0.84[EUR][1000 genomes]
rs66503419	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66513944	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66707855	0.87[EUR][1000 genomes]
rs67344323	0.92[EUR][1000 genomes]
rs67801322	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6980548	0.87[EUR][1000 genomes]
rs6992714	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72649240	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs751769	0.88[EUR][1000 genomes]
rs7813066	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7824991	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs7834364	0.88[EUR][1000 genomes]
rs790563	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs790564	0.81[EUR][1000 genomes]
rs790566	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs790567	0.88[EUR][1000 genomes]
rs790569	0.88[EUR][1000 genomes]
rs790571	0.88[EUR][1000 genomes]
rs806255	0.88[EUR][1000 genomes]
rs966294	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs978336	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831343	chr8:64436268-64642328	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64616200-64619600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:64616200-64621400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:64616400-64619400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr8:64617000-64628000	Weak transcription	Colon Smooth Muscle	Colon
5	chr8:64617200-64619400	Weak transcription	Fetal Brain Female	brain
6	chr8:64617600-64619800	Weak transcription	Brain Germinal Matrix	brain
7	chr8:64618400-64619400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:64618400-64619400	Weak transcription	Fetal Brain Male	brain

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