Variant report

Variant	rs790569
Chromosome Location	chr8:64621828-64621829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1149470	0.81[EUR][1000 genomes]
rs1149471	0.83[EUR][1000 genomes]
rs1149472	0.81[EUR][1000 genomes]
rs1149473	0.81[EUR][1000 genomes]
rs1149474	0.83[EUR][1000 genomes]
rs1149475	0.82[EUR][1000 genomes]
rs1217098	0.88[EUR][1000 genomes]
rs1217099	0.88[EUR][1000 genomes]
rs1217101	0.83[EUR][1000 genomes]
rs1217103	0.83[EUR][1000 genomes]
rs1217110	0.81[EUR][1000 genomes]
rs1238050	0.83[EUR][1000 genomes]
rs17215671	0.83[EUR][1000 genomes]
rs66503419	0.84[EUR][1000 genomes]
rs67344323	0.81[EUR][1000 genomes]
rs67801322	0.83[EUR][1000 genomes]
rs6992714	0.84[EUR][1000 genomes]
rs72649240	0.83[EUR][1000 genomes]
rs790563	0.83[EUR][1000 genomes]
rs790565	0.88[EUR][1000 genomes]
rs790566	0.87[EUR][1000 genomes]
rs978336	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831343	chr8:64436268-64642328	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64617000-64628000	Weak transcription	Colon Smooth Muscle	Colon
2	chr8:64621400-64623400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:64621400-64627000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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