Variant report

Variant	rs790563
Chromosome Location	chr8:64602568-64602569
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10090357	0.83[EUR][1000 genomes]
rs10090496	0.81[EUR][1000 genomes]
rs10091697	0.81[EUR][1000 genomes]
rs10106342	0.82[EUR][1000 genomes]
rs10957297	0.86[CEU][hapmap]
rs1149456	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1149457	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1149470	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1149471	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1149472	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1149473	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1149474	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1149475	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217096	0.84[EUR][1000 genomes]
rs1217098	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217099	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217101	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217103	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217106	0.89[EUR][1000 genomes]
rs1217107	0.97[EUR][1000 genomes]
rs1217108	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1217109	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1217110	0.99[EUR][1000 genomes]
rs1238050	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16930633	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16930637	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17215671	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28439112	0.83[EUR][1000 genomes]
rs28542151	0.85[EUR][1000 genomes]
rs28549862	0.85[EUR][1000 genomes]
rs28721440	0.85[EUR][1000 genomes]
rs57093124	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66503419	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66513944	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66707855	0.82[EUR][1000 genomes]
rs67344323	0.86[EUR][1000 genomes]
rs67801322	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6980548	0.82[EUR][1000 genomes]
rs6992714	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72649240	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs751769	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7813066	0.85[ASN][1000 genomes]
rs7824991	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs7834364	0.83[EUR][1000 genomes]
rs790564	0.86[EUR][1000 genomes]
rs790565	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs790566	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs790567	0.83[EUR][1000 genomes]
rs790569	0.83[EUR][1000 genomes]
rs790571	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs806255	0.83[EUR][1000 genomes]
rs966294	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs978336	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831343	chr8:64436268-64642328	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64601400-64614000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:64601800-64603400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:64601800-64603600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:64601800-64606800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:64601800-64615200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:64602000-64603400	Weak transcription	Brain Germinal Matrix	brain
7	chr8:64602000-64604200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:64602000-64614800	Weak transcription	Fetal Brain Male	brain

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