Variant report

Variant	rs1217096
Chromosome Location	chr8:64623146-64623147
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10957297	0.86[CEU][hapmap]
rs1149470	0.85[EUR][1000 genomes]
rs1149471	0.84[EUR][1000 genomes]
rs1149472	0.86[EUR][1000 genomes]
rs1149473	0.83[EUR][1000 genomes]
rs1149474	0.84[EUR][1000 genomes]
rs1149475	0.84[EUR][1000 genomes]
rs1217097	0.85[EUR][1000 genomes]
rs1217098	0.90[EUR][1000 genomes]
rs1217099	0.90[EUR][1000 genomes]
rs1217101	0.84[EUR][1000 genomes]
rs1217103	0.84[EUR][1000 genomes]
rs1217104	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1217105	0.84[EUR][1000 genomes]
rs1217107	0.84[EUR][1000 genomes]
rs1217108	0.84[EUR][1000 genomes]
rs1217109	0.84[EUR][1000 genomes]
rs1217110	0.83[EUR][1000 genomes]
rs1238050	0.82[EUR][1000 genomes]
rs1310173	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16930633	0.89[EUR][1000 genomes]
rs16930637	0.89[EUR][1000 genomes]
rs17215671	0.84[EUR][1000 genomes]
rs28542151	0.80[EUR][1000 genomes]
rs28549862	0.80[EUR][1000 genomes]
rs28721440	0.80[EUR][1000 genomes]
rs57093124	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58926565	0.92[EUR][1000 genomes]
rs66503419	0.86[EUR][1000 genomes]
rs66513944	0.90[EUR][1000 genomes]
rs67344323	0.82[EUR][1000 genomes]
rs67801322	0.84[EUR][1000 genomes]
rs6992714	0.86[EUR][1000 genomes]
rs72649240	0.84[EUR][1000 genomes]
rs7813066	0.86[EUR][1000 genomes]
rs7824991	0.95[CEU][hapmap]
rs790561	0.86[EUR][1000 genomes]
rs790563	0.84[EUR][1000 genomes]
rs790565	0.90[EUR][1000 genomes]
rs790566	0.89[EUR][1000 genomes]
rs790567	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs806255	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9694306	0.84[EUR][1000 genomes]
rs978336	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831343	chr8:64436268-64642328	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64617000-64628000	Weak transcription	Colon Smooth Muscle	Colon
2	chr8:64621400-64623400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:64621400-64627000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:64622000-64623400	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links