Variant report

Variant	rs3862073
Chromosome Location	chr8:64604188-64604189
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10957292	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11779429	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11989556	0.87[ASN][1000 genomes]
rs1217097	0.84[ASN][1000 genomes]
rs1562987	0.87[ASN][1000 genomes]
rs16930598	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16930623	0.91[EUR][1000 genomes]
rs2060859	0.82[ASN][1000 genomes]
rs73686537	0.91[EUR][1000 genomes]
rs790561	0.82[ASN][1000 genomes]
rs790564	0.89[ASN][1000 genomes]
rs812603	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831343	chr8:64436268-64642328	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64601400-64614000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:64601800-64606800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:64601800-64615200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr8:64602000-64604200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:64602000-64614800	Weak transcription	Fetal Brain Male	brain
6	chr8:64603400-64605400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:64603600-64604600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:64604000-64604400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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